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Raman spectroscopy-based screening of IgM positive and negative sera for dengue virus infection

机译:基于拉曼光谱的IgM阳性和阴性血清筛查登革热病毒感染

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摘要

A statistical method based on Raman spectroscopy for the screening of immunoglobulin M (IgM) in dengue virus (DENV) infected human sera is presented. In total, 108 sera samples were collected and their antibody indexes (AI) for IgM were determined through enzyme-linked immunosorbent assay (ELISA). Raman spectra of these samples were acquired using a 785 nm wavelength excitation laser. Seventy-eight Raman spectra were selected randomly and unbiasedly for the development of a statistical model using partial least square (PLS) regression, while the remaining 30 were used for testing the developed model. An R-square (r(2)) value of 0.929 was determined using the leave-one-sample-out (LOO) cross validation method, showing the validity of this model. It considers all molecular changes related to IgM concentration, and describes their role in infection. A graphical user interface (GUI) platform has been developed to run a developed multivariate model for the prediction of AI of IgM for blindly tested samples, and an excellent agreement has been found between model predicted and clinically determined values. Parameters like sensitivity, specificity, accuracy, and area under receiver operator characteristic (ROC) curve for these tested samples are also reported to visualize model performance.
机译:提出了一种基于拉曼光谱的统计方法,用于筛选登革热病毒(DENV)感染的人血清中的免疫球蛋白M(IgM)。总共收集了108个血清样品,并通过酶联免疫吸附测定(ELISA)确定了其IgM的抗体指数(AI)。这些样品的拉曼光谱是使用785 nm波长激发激光获得的。使用偏最小二乘(PLS)回归随机,无偏地选择了78个拉曼光谱用于统计模型的开发,而其余30个拉曼光谱则用于测试开发的模型。使用留一样本(LOO)交叉验证方法确定的R平方(r(2))值为0.929,显示了该模型的有效性。它考虑了与IgM浓度有关的所有分子变化,并描述了它们在感染中的作用。已经开发了图形用户界面(GUI)平台来运行开发的多元模型来预测盲测样品的IgM的AI,并且在模型预测值和临床确定值之间找到了极好的协议。还报告了这些测试样品的参数,如灵敏度,特异性,准确性和接收者操作员特征(ROC)曲线下的面积,以可视化模型性能。

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