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Fast level-set based image segmentation using coherent propagation

机译:使用相干传播的基于快速水平集的图像分割

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Purpose: The level-set method is known to require long computation time for 3D image segmentation, which limits its usage in clinical workflow. The goal of this study was to develop a fast level-set algorithm based on the coherent propagation method and explore its character using clinical datasets. Methods: The coherent propagation algorithm allows level set functions to converge faster by forcing the contour to move monotonically according to a predicted developing trend. Repeated temporary backwards propagation, caused by noise or numerical errors, is then avoided. It also makes it possible to detect local convergence, so that the parts of the boundary that have reached their final position can be excluded in subsequent iterations, thus reducing computation time. To compensate for the overshoot error, forward and backward coherent propagation is repeated periodically. This can result in fluctuations of great magnitude in parts of the contour. In this paper, a new gradual convergence scheme using a damping factor is proposed to address this problem. The new algorithm is also generalized to non-narrow band cases. Finally, the coherent propagation approach is combined with a new distance-regularized level set, which eliminates the needs of reinitialization of the distance. Results: Compared with the sparse field method implemented in the widely available ITKSnap software, the proposed algorithm is about 10 times faster when used for brain segmentation and about 100 times faster for aorta segmentation. Using a multiresolution approach, the new method achieved 50 times speed-up in liver segmentation. The Dice coefficient between the proposed method and the sparse field method is above 99% in most cases.Conclusions: A generalized coherent propagation algorithm for level set evolution yielded substantial improvement in processing time with both synthetic datasets and medical images.
机译:目的:水平设置方法已知需要较长的计算时间来进行3D图像分割,这限制了其在临床工作流程中的使用。这项研究的目的是开发一种基于相干传播方法的快速水平集算法,并使用临床数据集探索其特征。方法:相干传播算法通过强制轮廓根据预测的发展趋势单调移动,从而使水平集函数收敛更快。这样就避免了由噪声或数值误差引起的重复的暂时向后传播。还可以检测局部收敛,从而可以在后续迭代中排除到达最终位置的边界部分,从而减少了计算时间。为了补偿过冲误差,定期重复进行向前和向后相干传播。这会导致轮廓部分出现很大的波动。本文提出了一种新的使用阻尼因子的渐进收敛方案来解决这个问题。新算法也被推广到非窄带情况。最后,相干传播方法与新的距离正则化水平集结合在一起,从而消除了重新初始化距离的需要。结果:与在广泛使用的ITKSnap软件中实施的稀疏场方法相比,该算法在用于脑部分割时快约10倍,对主动脉分割时快约100倍。使用多分辨率方法,该新方法在肝脏分割中的速度提高了50倍。在大多数情况下,所提出的方法与稀疏场方法之间的Dice系数都在99%以上。结论:用于水平集演化的广义相干传播算法在合成数据集和医学图像方面的处理时间有了实质性的改善。

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