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Validation of a DNA mixture statistics tool incorporating allelic drop-out and drop-in

机译:验证结合了等位基因缺失和缺失的DNA混合物统计工具

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摘要

DNA mixture analysis is a current topic of discussion in the forensics literature. Of particular interest is how to approach mixtures where allelic drop-out and/or drop-in may have occurred. The Office of Chief Medical Examiner (OCME) of The City of New York has developed and validated the Forensic Statistical Tool (FST), a software tool for likelihood ratio analysis of forensic DNA samples, allowing for allelic drop-out and drop-in. FST can be used for single source samples and for mixtures of DNA from two or three contributors, with or without known contributors. Drop-out and drop-in probabilities were estimated empirically through analysis of over 2000 amplifications of more than 700 mixtures and single source samples. Drop-out rates used by FST are a function of the Identifiler ? locus, the quantity of template DNA amplified, the number of amplification cycles, the number of contributors to the sample, and the approximate mixture ratio (either unequal or approximately equal). Drop-out rates were estimated separately for heterozygous and homozygous genotypes. Drop-in rates used by FST are a function of number of amplification cycles only. FST was validated using 454 mock evidence samples generated from DNA mixtures and from items handled by one to four persons. For each sample, likelihood ratios (LRs) were computed for each true contributor and for each profile in a database of over 1200 non-contributors. A wide range of LRs for true contributors was obtained, as true contributors' alleles may be labeled at some or all of the tested loci. However, the LRs were consistent with OCME's qualitative assessments of the results. The second set of data was used to evaluate FST LR results when the test sample in the prosecution hypothesis of the LR is not a contributor to the mixture. With this validation, we demonstrate that LRs generated using FST are consistent with, but more informative than, OCME's qualitative sample assessments and that LRs for non-contributors are appropriately assigned.
机译:DNA混合物分析是法医文献中当前讨论的主题。特别感兴趣的是如何处理可能发生等位基因脱落和/或脱落的混合物。纽约市首席体检医师办公室(OCME)已开发并验证了法医统计工具(FST),这是一种用于法医DNA样本似然比分析的软件工具,可以进行等位基因剔除和插入。 FST可用于单一来源的样品,也可用于来自两个或三个贡献者(有或没有已知贡献者)的DNA混合物。通过分析700多种混合物和单一来源样品的2000多次扩增,经验性地估计了辍学和辍学的可能性。 FST使用的辍学率是Identifiler的函数吗?位置,扩增的模板DNA数量,扩增循环数,样品贡献者数以及近似混合比(不相等或近似相等)。分别估计杂合和纯合基因型的辍学率。 FST使用的插入率仅是扩增循环数的函数。使用从DNA混合物和一到四个人处理的物品中产生的454个模拟证据样本验证了FST。对于每个样本,在超过1200个非贡献者的数据库中,为每个真实贡献者和每个配置文件计算似然比(LR)。由于可以在一些或所有测试基因座上标记真正贡献者的等位基因,因此获得了许多真正贡献者的LR。但是,LR与OCME对结果的定性评估是一致的。当LR的起诉假设中的测试样品对混合物不起作用时,第二组数据用于评估FST LR结果。通过此验证,我们证明了使用FST生成的LR与OCME的定性样本评估是一致的,但比OCME的定性样本评估更具参考价值,并且为非贡献者分配了LR。

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