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Lab Retriever: a software tool for calculating likelihood ratios incorporating a probability of drop-out for forensic DNA profiles

机译:实验室检索器:用于计算丢失的似然比用于法医DNA型材的似然比的软件工具

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Background Technological advances have enabled the analysis of very small amounts of DNA in forensic cases. However, the DNA profiles from such evidence are frequently incomplete and can contain contributions from multiple individuals. The complexity of such samples confounds the assessment of the statistical weight of such evidence. One approach to account for this uncertainty is to use a likelihood ratio framework to compare the probability of the evidence profile under different scenarios. While researchers favor the likelihood ratio framework, few open-source software solutions with a graphical user interface implementing these calculations are available for practicing forensic scientists. Results To address this need, we developed Lab Retriever, an open-source, freely available program that forensic scientists can use to calculate likelihood ratios for complex DNA profiles. Lab Retriever adds a graphical user interface, written primarily in JavaScript, on top of a C++ implementation of the previously published R code of Balding. We redesigned parts of the original Balding algorithm to improve computational speed. In addition to incorporating a probability of allelic drop-out and other critical parameters, Lab Retriever computes likelihood ratios for hypotheses that can include up to four unknown contributors to a mixed sample. These computations are completed nearly instantaneously on a modern PC or Mac computer. Conclusions Lab Retriever provides a practical software solution to forensic scientists who wish to assess the statistical weight of evidence for complex DNA profiles. Executable versions of the program are freely available for Mac OSX and Windows operating systems.
机译:背景技术技术进步使得在法医病例中对非常少量的DNA进行了分析。然而,来自此类证据的DNA谱经常不完整,并且可以包含来自多个人的贡献。这些样本的复杂性困扰着对这些证据的统计重量的评估。解释这种不确定性的一种方法是使用似然比框架来比较不同场景下证据简介的可能性。虽然研究人员有利于可能性比率框架,但很少有利用实施这些计算的图形用户界面的开源软件解决方案可用于练习法医科学家。结果解决了这种需求,我们开发了实验室猎犬,这是一个开源,即法语科学家可以用于计算复杂DNA轮廓的似然比的开源。 Lab Retriever添加了一个图形用户界面,主要是在JavaScript中编写的,首先发布的秃顶R代码的C ++实现。我们重新设计了原始秃顶算法的部分以提高计算速度。除了包含等位基因丢弃和其他关键参数的概率之外,实验室检索器还计算可以包括最多四个未知贡献者的假设的似然比。这些计算几乎瞬间在现代PC或Mac计算机上完成。结论Lab Retrivever提供了一种实用的软件解决方案,致法科学家们希望评估复杂DNA简档的证据统计重量。程序的可执行版本可用于Mac OSX和Windows操作系统。

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