首页> 外文期刊>Journal of chemical theory and computation: JCTC >Development of a New Coarse-Grained Model to Simulate Assembly of Cellulose Chains Due to Hydrogen Bonding
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Development of a New Coarse-Grained Model to Simulate Assembly of Cellulose Chains Due to Hydrogen Bonding

机译:开发新的粗粒模型,以模拟纤维素链组装引起的氢键合

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In this work, we present a new coarse-grained (CG) model that captures the directional hydrogen bonding interactions that drive cellulose chains to assemble into ordered aggregates. This CG model balances the incorporation of chemical details at the monomer level needed to represent directional interactions and the coarse-graining needed to capture large length scales and time scales associated with macromolecular assembly. We validate this CG model by first comparing the cellulose single-chain structure in the CG molecular dynamics (MD) simulations with that in atomistic MD simulations. We also compare the hydrogen bonding pattern, interchain distance, and interchain orientation seen in assembled cellulose chains observed in CG MD simulations with those seen in experimental crystal structures of cellulose. Upon validation, we present the aggregation behavior of cellulose chains with “silenced” hydrogen bonding site interactions to mimic cellulose chains that are chemically modified at the donor and acceptor hydrogen bonding sites (e.g., methylcellulose). We expect this type of CG model to be useful in predicting the morphology of cellulose chains in solution under a wide range of solution conditions and chemical modifications.
机译:在这项工作中,我们提出了一种新的粗粒(CG)模型,其捕获使纤维素链驱动纤维素链组装成有序聚集体的定向氢键相互作用。该CG模型平衡了表示表示定向相互作用的单体水平的化学细节,以及捕获与大分子组件相关的大长度尺度和时间尺度所需的粗大磨碎。通过首先将CG分子动力学(MD)模拟中的纤维素单链结构进行比较,通过在原子MD模拟中进行比较来验证该CG模型。我们还比较在CG MD模拟中观察到的组装纤维素链中的氢键图案,间隔距离和中间方向,与在纤维素的实验晶体结构中观察到的纤维素链中。在验证后,我们向纤维素链的聚集行为与“沉默”氢键位点相互作用,以在供体和受体氢键位点(例如甲基纤维素)在化学修饰的模拟纤维素链中。我们预计这种CG模型可用于在各种溶液条件下预测溶液中纤维素链的形态和化学修饰。

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