Hydrostatic and osmotic pressure study of the hairpin ribozyme

摘要

The recent discovery of numerous catalytically active RNAs in various living species as well as the in vitro selection of a large series of RNA aptamers able to bind specifically various Molecules such as metabolites and co-factors, emphasize the adaptability of RNAs through the plasticity of their secondary structure. Furthermore, all these observations give support to the "RNA world" hypothesis as a step in the primitive development of life on Earth. On this background, we used high pressure to study the mechanism of action of a model hairpin ribozyme which exhibits self-cleavage and ligation. The activation volume (Delta V-not equal) of the cleavage reaction (34 +/- 4ml/mol) indicates that an important compaction of the RNA molecule Occurs during the reaction and must be accompanied by a significant movement of water molecules. Indeed, such a release of 78 4 water molecules per RNA molecule could be measured by complementary osmotic shock experiments. These results are consistent with the information provided by the structural studies which indicate that two loops of the RNA molecule should come into contact for the reaction to occur. The high pressure study of a modified form of the ribozyme whose activity is strictly dependent oil the presence of adenine as a co-factor should bring some information about the structural significance of this important Delta V-not equal of activation. (c) 2006 Elsevier B.V All rights reserved.