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Fully-Automated Identification of Imaging Biomarkers for Post-Operative Cerebellar Mutism Syndrome Using Longitudinal Paediatric MRI

机译:使用纵向小儿MRI的术后小脑突变综合征的成像生物标志物的全自动鉴定

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摘要

Post-operative cerebellar mutism syndrome (POPCMS) in children is a post- surgical complication which occurs following the resection of tumors within the brain stem and cerebellum. High resolution brain magnetic resonance (MR) images acquired at multiple time points across a patient's treatment allow the quantification of localized changes caused by the progression of this syndrome. However, MR images are not necessarily acquired at regular intervals throughout treatment and are often not volumetric. This restricts the analysis to 2D space and causes difficulty in intra- and inter-subject comparison. To address these challenges, we have developed an automated image processing and analysis pipeline. Multi-slice 2D MR image slices are interpolated in space and time to produce a 4D volumetric MR image dataset providing a longitudinal representation of the cerebellum and brain stem at specific time points across treatment. The deformations within the brain over time are represented using a novel metric known as the Jacobian of deformations determinant. This metric, together with the changing grey-level intensity of areas within the brain over time, are analyzed using machine learning techniques in order to identify biomarkers that correspond with the development of POPCMS following tumor resection. This study makes use of a fully automated approach which is not hypothesis-driven. As a result, we were able to automatically detect six potential biomarkers that are related to the development of POPCMS following tumor resection in the posterior fossa.
机译:儿童手术后的小脑突变综合征(Popcms)是一种手术后并发症,其在脑干和小脑中切除肿瘤后发生。在患者治疗的多个时间点获得的高分辨率脑磁共振(MR)图像允许定量由该综合征的进展引起的局部变化。然而,在整个处理过程中不一定以规则的间隔获取MR图像,并且通常不是体积的。这将分析限制为2D空间,并导致帧内和互相间比较难度。为解决这些挑战,我们开发了一种自动图像处理和分析管道。在空间和时间内插值多切片2D MR图像切片以产生4D体积MR图像数据集,其在跨处理的特定时间点处提供小脑和脑杆的纵向表示。随着时间的推移,大脑内的变形是使用称为变形决定簇的jacobian的新公制来表示。使用机器学习技术分析该度量与大脑内大脑内的区域的改变灰度强度一起进行分析,以识别与肿瘤切除后斑块的发育相对应的生物标志物。本研究利用了一种完全自动化的方法,这不是假设驱动的。因此,我们能够自动检测六个潜在的生物标志物,这些潜在的生物标志物与后窝肿瘤切除后肿瘤切除后的发育。

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