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The Double Nucleation Model for Sickle Cell Haemoglobin Polymerization: Full Integration and Comparison with Experimental Data

机译:镰状细胞血红蛋白聚合的双核模型:完全集成并与实验数据进行比较

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Sickle cell haemoglobin (HbS) polymerization reduces erythrocyte deformability, causing deleterous vaso-occlusions. The double-nucleation model states that polymers grow from HbS aggregates, the nuclei, (i) in solution (homogeneous nucleation), (ii) onto existing polymers (heterogeneous nucleation). When linearized at initial HbS concentration, this model predicts early polymerization and its characteristic delay-time (Ferrone et al. J Mol Biol 183(4):591-610, 611-631, 1985). Addressing its relevance for describing complete polymerization, we constructed the full, non-linearized model (Simulink~R, The MathWorks). Here, we compare the simulated outputs to experimental progress curves (n = 6-8 different [HbS], 3-6 mM range, from Ferrone's group). Within 10% from start, average root mean square (rms) deviation between simulated and experimental curves is 0.04 ± 0.01 (25°C,n = 8;mean± standard error). Conversely, for complete progress curves, averaged rms is 0.48 ± 0.04. This figure is improved to 0.13 ± 0.01 by adjusting heterogeneous pathway parameters (p < 0.01): the nucleus stability (σ2 μ_(cc): + 40%), and the fraction of polymer surface available for nucleation (φ), from 5e~(-7), (3 mM) to 13 (6 mM). Similar results are obtained at 37°C. We conclude that the physico-chemical description of heterogeneous nucleation warrants refinements in order to capture the whole HbS polymerization process.
机译:镰状细胞血红蛋白(HbS)聚合降低红细胞的可变形性,引起有害的血管闭塞。双核化模型指出,聚合物从HbS聚集体的核中生长出来,(i)在溶液中(均相成核),(ii)到现有聚合物上(均相成核)。当在初始HbS浓度下线性化时,该模型预测早期聚合及其特征性的延迟时间(Ferrone等人,J Mol Biol 183(4):591-610,611-631,1985)。为了解决其与描述完全聚合反应的相关性,我们构建了完整的非线性模型(Simulink〜R,MathWorks)。在这里,我们将模拟输出与实验进度曲线进行比较(n = 6-8不同的[HbS],3-6 mM范围,来自Ferrone的研究组)。从开始算起,在10%以内,模拟曲线和实验曲线之间的平均均方根(rms)偏差为0.04±0.01(25°C,n = 8;平均值±标准误差)。相反,对于完整的进度曲线,平均均方根值为0.48±0.04。通过调整异构路径参数(p <0.01):核稳定性(σ2μ_(cc):+ 40%),以及可用于成核的聚合物表面分数(φ),该数字从5e〜提高到0.13±0.01。 (-7),(3 mM)至13(6 mM)。在37°C下可获得类似的结果。我们得出的结论是,为了捕获整个HbS聚合过程,需要对异构核的理化描述进行改进。

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