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Evaluation of PCR based on gene apxIVA associated with 16S rDNA sequencing for the identification of Actinobacillus pleuropneumoniae and related species

机译:基于与16S rDNA测序相关的apxIVA基因的PCR鉴定胸膜肺炎放线杆菌及相关物种的评估

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The pleuropneumonia caused by Actinobacillus pleuropneumoniae (App) is one the most important swine respiratory diseases. Biochemical and serological tests are widely applied for App diagnosis and characterization. However, in some isolates, conflicting results are found. The present work focus on the characterization of 29 isolates biochemically classified as A. pleuropneumoniae, collected from swine in herds with or without a clinical history of pleuropneumonia. Sixteen isolates were from healthy swine, initially classified as nonserotypable A. pleuropneumoniae; they displayed differences in the molecular characterization patterns of App (genes cpx and apxI, II, and III). Those bacteria that could not be serotyped were submitted to rDNA 16S sequencing. All 29 isolates were analyzed by PCR for the presence of the apxIVA gene. Thirteen isolates (45%) were confirmed to be A. pleuropneumoniae by PCR, nine being from diseased animals (31%) and four from healthy animals (14%) with conclusive serotyping. The rDNA 16S sequencing was used to classify the other 16 isolates in related species other than A. pleuropneumoniae, resulting in eleven A. minor, three A. porcinus, and two Pasteurella sp. Because of conflicting results between biochemical tests and rDNA 16S sequencing, the biochemical characterization was repeated, and the new results were in agreement with the rDNA 16S sequencing data. Biochemical characterization proved to be efficient for the majority of the A. pleuropneumoniae isolates. Nevertheless, conventional tests can render conflicting results, and other methodologies, such as amplification of A. pleuropneumoniae specific apxIVA gene and rDNA 16S sequencing, are very useful for improved classification. We also observed a great variety in rDNA 16S sequences from different A. minor isolates.
机译:由胸膜肺炎放线杆菌(Appinobacillus pleuropneumoniae,App)引起的胸膜肺炎是最重要的猪呼吸道疾病之一。生化和血清学测试已广泛应用于App诊断和表征。但是,在某些隔离株中发现了矛盾的结果。本工作着重于29种从生化分类为胸膜肺炎的分离株的表征,这些分离株是从有或没有胸膜肺炎临床病史的猪群中收集的。 16株来自健康猪的分离株,最初被分类为不可血清型胸膜肺炎放线杆菌;他们在App的分子表征模式(基因cpx和apxI,II和III)中显示出差异。那些无法进行血清分型的细菌将接受rDNA 16S测序。通过PCR分析所有29个分离株的apxIVA基因的存在。通过PCR证实十三株分离株(45%)是胸膜肺炎链球菌,其中九株来自患病动物(31%),四株来自健康动物(14%)并具有血清学分型。使用rDNA 16S测序对除胸膜肺炎放线杆菌以外的相关物种中的其他16个分离株进行分类,从而产生了11个次要曲霉,3个猪曲霉和2个巴斯德氏菌。由于生化测试与rDNA 16S测序之间的结果存在冲突,因此重复了生化表征,新结果与rDNA 16S测序数据相符。生化特性被证明对大多数胸膜肺炎链球菌分离物有效。然而,常规测试可能会产生矛盾的结果,其他方法,例如胸膜肺炎链球菌特异性apxIVA基因的扩增和rDNA 16S测序,对于改善分类非常有用。我们还观察到了来自不同次要菌株的rDNA 16S序列的多样性。

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