首页> 外文期刊>The Journal of Chemical Physics >Correlations in liquid water for the TIP3P-Ewald, TIP4P-2005, TIP5P-Ewald, and SWM4-NDP models
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Correlations in liquid water for the TIP3P-Ewald, TIP4P-2005, TIP5P-Ewald, and SWM4-NDP models

机译:TIP3P-Ewald,TIP4P-2005,TIP5P-Ewald和SWM4-NDP模型在液态水中的相关性

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Water is one of the simplest molecules in existence, but also one of the most important in biological and engineered systems. However, understanding the structure and dynamics of liquid water remains a major scientific challenge. Molecular dynamics simulations of liquid water were performed using the water models TIP3P-Ewald, TIP4P-2005, TIP5P-Ewald, and SWM4-NDP to calculate the radial distribution functions (RDFs), the relative angular distributions, and the excess enthalpies, entropies, and free energies. In addition, lower-order approximations to the entropy were considered, identifying the fourth-order approximation as an excellent estimate of the full entropy. The second-order and third-order approximations are ~20% larger and smaller than the true entropy, respectively. All four models perform very well in predicting the radial distribution functions, with the TIP5P-Ewald model providing the best match to the experimental data. The models also perform well in predicting the excess entropy, enthalpy, and free energy of liquid water. The TIP4P-2005 and SWM4-NDP models are more accurate than the TIP3P-Ewald and TIP5P-Ewald models in this respect. However, the relative angular distribution functions of the four water models reveal notable differences. The TIP5P-Ewald model demonstrates an increased preference for water molecules to act both as tetrahedral hydrogen bond donors and acceptors, whereas the SWM4-NDP model demonstrates an increased preference for water molecules to act as planar hydrogen bond acceptors. These differences are not uncovered by analysis of the RDFs or the commonly employed tetrahedral order parameter. However, they are expected to be very important when considering water molecules around solutes and are thus a key consideration in modelling solvent entropy.
机译:水是存在的最简单的分子之一,但在生物和工程系统中也是最重要的分子之一。然而,了解液态水的结构和动力学仍然是一项重大的科学挑战。使用水模型TIP3P-Ewald,TIP4P-2005,TIP5P-Ewald和SWM4-NDP进行液态水的分子动力学模拟,以计算径向分布函数(RDF),相对角分布以及过量的焓,熵,和自由能。此外,考虑了熵的低阶近似,将四阶近似确定为对整个熵的极好估计。二阶和三阶近似分别比真实熵大20%左右和小于小熵。这四个模型在预测径向分布函数方面均表现出色,其中TIP5P-Ewald模型可提供与实验数据的最佳匹配。该模型还可以很好地预测液态水的过量熵,焓和自由能。在这方面,TIP4P-2005和SWM4-NDP模型比TIP3P-Ewald和TIP5P-Ewald模型更准确。但是,四个水模型的相对角度分布函数显示出显着差异。 TIP5P-Ewald模型显示出对水分子同时充当四面体氢键供体和受体的偏好增加,而SWM4-NDP模型显示出对水分子用作平面氢键受体的偏好增加。通过对RDF或常用的四面体阶数参数的分析未发现这些差异。但是,在考虑溶质周围的水分子时,它们被认为非常重要,因此是建模溶剂熵的关键考虑因素。

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