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Modeling the amide I bands of small peptides

机译:模拟小肽的酰胺I条带

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In this paper different floating oscillator models for describing the amide I band of peptides and proteins are compared with density functional theory (DFT)calculations.Models for the variation of the frequency shifts of the oscillators and the nearest-neighbor coupling between them with respect to conformation are constructed from DFT normal mode calculations on N-acetyl-glycine-N'-methylamide.The calculated frequencies are compared with those obtained from existing electrostatic models.Furthermore,a new transition charge coupling model is presented.We suggest a model which combines the nearest-neighbor maps with long-range interactions accounted for using the new transition charge model and an existing electrostatic map for long-range interaction frequency shifts.This model and others,which account for the frequency shifts by electrostatic maps exclusively,are tested by comparing the predicted IR spectra with those from DFT calculations on the pentapeptide [Leu]-enkephalin.The new model described above gives the best agreement and,after a systematic blueshift is accounted for,reproduces the DFT frequencies to within 3.5 cm~(-1).The correlation of the intensities for this model with intensities from DFT calculations is 0.94.
机译:本文将描述肽和蛋白质酰胺I条带的不同浮动振荡器模型与密度泛函理论(DFT)计算进行了比较。振荡器的频移变化以及它们之间的最近邻居耦合模型通过在N-乙酰基-甘氨酸-N'-甲酰胺上进行DFT正模计算,构造构象,并将计算出的频率与从现有静电模型获得的频率进行比较。此外,提出了一种新的过渡电荷耦合模型。使用新的跃迁电荷模型和具有长距离相互作用的最近邻居图说明了使用长距离相互作用的频移的新跃迁电荷模型和现有的静电图。此模型和其他模型(仅通过静电图说明了频移)通过将预测的红外光谱与DFT计算得出的五肽[Leu]脑啡肽光谱进行比较。上述odel给出了最佳一致性,并且在考虑了系统的蓝移之后,将DFT频率重现到3.5 cm〜(-1)之内。该模型的强度与DFT计算得出的强度之间的相关性为0.94。

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