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Solvent effects on the collapse dynamics of polymers

机译:溶剂对聚合物破坏动力学的影响

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The effect of solvent on the collapse dynamics of polymers is studied using computer simulation. Two cases are investigated, one where the solvent is incorporated through a pairwise additive attraction between the polymer beads and a random force on each polymer bead, and another where the solvent is incorporated in an explicit fashion as a second component. Brownian dynamics and molecular dynamics simulations are used in the former and latter model, respectively, with intermolecular interactions chosen so that the equilibrium size of the polymer is similar in both models at similar conditions. In the Brownian dynamics simulations, at short times local blobs of monomers are found separated by linear segments. With time the blobs grow in size and coalesce to form sausage like shapes. These sausages gradually become thicker and shorter until the final shape of a spherical globule is reached. The first stage is rapid whereas the second sausage-sphere stage is slow. In this stage the polymer often gets trapped in local minima and the change in size with time occurs through discrete jumps, and the equilibrium conformation is often not reached. In contrast, in the molecular dynamics simulations with explicit solvent, the size of the polymer changes smoothly with time, and the polymer does not get trapped in local minima for the cases investigated, although the sequence of polymer shapes is similar. This suggests that incorporating solvent molecules explicitly is important in the computer simulations of collapse and folding of polymers.
机译:使用计算机模拟研究了溶剂对聚合物崩溃动力学的影响。研究了两种情况,一种情况是通过聚合物小珠之间的成对加成吸引作用和每个聚合物小珠上的随机力来掺入溶剂,另一种情况是通过显式方式掺入溶剂作为第二组分。在前一个模型和后一个模型中分别使用布朗动力学和分子动力学模拟,并选择了分子间相互作用,以使聚合物的平衡大小在两个模型中的相似条件下相似。在布朗动力学模拟中,在短时间内发现单体的局部斑点被线性链段分开。随着时间的流逝,斑点逐渐增大并合并形成类似香肠的形状。这些香肠逐渐变粗和变短,直到达到球形小球的最终形状。第一阶段迅速,而第二香肠球阶段则缓慢。在这一阶段,聚合物经常被困在局部极小值中,并且尺寸随时间的变化是通过不连续的跳跃而发生的,并且通常无法达到平衡构象。相反,在使用明确溶剂的分子动力学模拟中,尽管聚合物形状的顺序相似,但聚合物的大小会随时间平稳变化,并且对于所研究的情况,聚合物不会陷入局部最小值。这表明明确地引入溶剂分子在聚合物塌陷和折叠的计算机模拟中很重要。

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