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Theoretical exploration of stability and steepness of algebraic steady state equations describing kinetics of elementary cellular reaction cycles

机译:描述基本单元反应周期动力学的代数稳态方程稳定性和陡度的理论探索

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Cellular stimulus/response kinetics is described using ordinary differential equations (ODEs). In a steady state system, time-dependent ODEs can be converted to algebraic equations. The solutions of the equations reveal the relationships between the strength of an extracellular signal and the magnitude of the cellular response (the stimulus/ response curves). In the present study, we investigated the dependence between the number of solutions (multistability) of the equations and the gradient of the inflection point (steepness) of the stimulus/response curve on a kinetic parameter space, defined by the ratios of the catalytic efficiency (referred to as λ_1 and λ_2) of bi-connected elementary cellular reaction cycles (cycles 1 and 2, respectively), composed of a substrate and two enzymes. When λ_2 was initially small and then increased (λ _1 was fixed), the steepness also increased, leading to the monostability to bistability transition. This was the case with the λ_1 axis, although when λ_1 increased (λ_2 was fixed), the steepness decreased, resulting in the bistability to monostability transition. This is the first report to systematically show that the steepness is closely correlated with the stability of elementary cellular reaction systems.
机译:使用常微分方程(ODE)描述细胞的刺激/反应动力学。在稳态系统中,时间相关的ODE可以转换为代数方程。方程的解揭示了细胞外信号的强度与细胞反应的大小(刺激/反应曲线)之间的关系。在本研究中,我们研究了方程的解数(多重稳定性)与动力学参数空间上刺激/响应曲线的拐点(陡度)的拐点梯度(由催化效率之比定义)之间的依赖性。由底物和两种酶组成的双连接基本细胞反应周期(分别为周期1和2)的“λ_1”和“λ_2”。当λ_2最初很小,然后增加(λ_1固定)时,陡度也增加,导致单稳态向双稳态过渡。 λ_1轴就是这种情况,尽管当λ_1增加时(λ_2固定),陡度降低,导致双稳态向单稳态转变。这是第一个系统地显示陡度与基本细胞反应系统的稳定性密切相关的报告。

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