A Simple Sensitive Program for Detecting Internal Repeats in Sets of Multiply Aligned Homologous Proteins

Yufeng Zhai; Milton H. Saier Jr.

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A Simple Sensitive Program for Detecting Internal Repeats in Sets of Multiply Aligned Homologous Proteins

机译：一个简单的敏感程序，用于检测多重对齐的同源蛋白质组中的内部重复

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摘要

We designed a simple but sensitive program, IntraCompare, for identifying internal repeats in families of homologous proteins. The protein sequences are aligned (Clustal X), the regions to be compared are selected, and all potential repeat sequences are compared with all others. The output provides comparison scores (GAP program) expressed in standard deviations.

机译：我们设计了一个简单但敏感的程序IntraCompare，用于鉴定同源蛋白家族中的内部重复序列。对齐蛋白质序列（Clustal X），选择要比较的区域，并将所有可能的重复序列与所有其他重复序列进行比较。输出提供以标准偏差表示的比较分数（GAP程序）。

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《Journal of molecular microbiology and biotechnology: JMMB》 |2002年第4期|共3页
作者
Yufeng Zhai; Milton H. Saier Jr.;
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正文语种 eng
中图分类分子生物学;
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1. A Simple Sensitive Program for Detecting Internal Repeats in Sets of Multiply Aligned Homologous Proteins [J] . Yufeng Zhai, Milton H. Saier Jr. Journal of molecular microbiology and biotechnology: JMMB . 2002,第4期

机译：一个简单的敏感程序，用于检测多重对齐的同源蛋白质组中的内部重复
2. Flexible programs for the prediction of average amphipathicity of multiply aligned homologous proteins: application to integral membrane transport proteins. [J] . Le T, Saier MH Jr, Tseng TT Molecular membrane biology . 1999,第2期

机译：灵活的程序，用于预测多重比对同源蛋白的平均两亲性：应用于整体膜转运蛋白。
3. A Web-Based Program for the Prediction of Average Hydropathy, Average Amphipathicity and Average Similarity of Multiply Aligned Homologous Proteins [J] . Yufeng Zhai, Milton H. Saier Jr. Journal of molecular microbiology and biotechnology: JMMB . 2001,第2期

机译：一个基于Web的程序，用于预测多重排列的同源蛋白质的平均亲水性，平均两亲性和平均相似性
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5. Elucidating the origins of cooperativity in protein folding and detecting parallel folding pathways with consensus Ankyrin Repeat proteins [D] . Aksel, Tural 2012

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A Simple Sensitive Program for Detecting Internal Repeats in Sets of Multiply Aligned Homologous Proteins

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