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首页> 外文期刊>Journal of chemical theory and computation: JCTC >Exploiting QM/MM capabilities in geometry optimization: A microiterative approach using electrostatic embedding
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Exploiting QM/MM capabilities in geometry optimization: A microiterative approach using electrostatic embedding

机译:在几何优化中利用QM / MM功能:使用静电嵌入的微迭代方法

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We present a microiterative adiabatic scheme for quantum mechanical/molecular mechanical (QM/ MM) energy minimization that fully optimizes the MM part in each QM macroiteration. This scheme is applicable not only to mechanical embedding but also to electrostatic and polarized embedding. The electrostatic QM/MM interactions in the microiterations are calculated from electrostatic potential charges fitted on the fly to the QM density. Corrections to the energy and gradient expressions ensure that macro-and microiterations are performed on the same energy surface. This results in excellent convergence properties and no loss of accuracy compared to standard optimization. We test our implementation on water clusters and on two enzymes using electrostatic embedding, as well as on a surface example using polarized embedding with a shell model. Our scheme is especially well-suited for systems containing large MM regions, since the computational effort for the optimization is almost independent of the MM system size. The microiterations reduce the number of required QM calculations typically by a factor of 2-10, depending on the system.
机译:我们提出了一种用于量子力学/分子机械(QM / MM)能量最小化的微迭代绝热方案,该方案充分优化了每个QM macroiteration中的MM部分。该方案不仅适用于机械嵌入,而且适用于静电和极化嵌入。微小迭代中的静电QM / MM相互作用是通过动态拟合到QM密度的静电势电荷来计算的。对能量和梯度表达式的校正可确保在相同的能量表面上执行宏观和微观迭代。与标准优化相比,这将导致出色的收敛性能,并且不会降低精度。我们使用静电嵌入在水团簇和两种酶上以及在带有壳模型的极化嵌入的表面示例上测试我们的实现。我们的方案特别适合包含较大MM区域的系统,因为优化的计算工作量几乎与MM系统大小无关。根据系统的不同,微迭代通常会将所需的QM计算数量减少2-10倍。

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