Finite time thermodynamic coupling in a biochemical network

摘要

The paper describes some thermodynamic constrains and relations in biochemical or metabolic network and provides a basis for entropy enthalpy compensation. Conventional definition of macroscopic forces and fluxes leads to a paradox namely, non-existence of positive efficiency of a chemically driven process. This paradox is resolved by deriving an appropriate definition of macroscopic force using the local balance equations. Entropy enthalpy compensation, whose thermodynamic basis is so far unclear, also follows. The method provides an account of how reactive pathways are coupled, the strength of coupling between a pathway pair depending on the product of their respective enthalpies. The obligatory role of the presence of a common chemical intermediate in defining coupling becomes unnecessary; such intermediate-free coupling being a key feature of metabolic energy transduction. The redefined flux and force can also be exploited to explain surface to volume ratio dependence of coupled networks. Lastly, the thermodynamic rationale for the Bergman's eco-geographic rule, namely the reduced ability of larger animals to avoid stress follows from the generalized expression for coupling coefficients. Higher surface to volume ratio is shown to make the organism resistant to external perturbations.