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How Size and Aggregation of Ice-Binding Proteins Control Their Ice Nucleation Efficiency

机译:冰结合蛋白的尺寸和聚合如何控制其冰成核效率

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摘要

Organisms that thrive at cold temperatures produce ice-binding proteins to manage the nucleation and growth of ice. Bacterial ice-nucleating proteins (INP) are typically large and form aggregates in the cell membrane, while insect hyperactive antifreeze proteins (AFP) are soluble and generally small. Experiments indicate that larger ice-binding proteins and their aggregates nucleate ice at warmer temperatures. Nevertheless, a quantitative understanding of how size and aggregation of ice-binding proteins determine the temperature T-het at which proteins nucleate ice is still lacking. Here, we address this question using molecular simulations and nucleation theory. The simulations indicate that the 2.5 nm long antifreeze protein TmAFP nucleates ice at 2 +/- 1 degrees C above the homogeneous nucleation temperature, in good agreement with recent experiments. We predict that the addition of ice-binding loops to TmAFP increases T-het, but not enough to compete in efficiency with the bacterial INP. We implement an accurate procedure to determine T-het of surfaces of finite size using classical nucleation theory, and, after validating the theory against T-het of the proteins in molecular simulations, we use it to predict T-het of the INP of Ps. syringae as a function of the length and number of proteins in the aggregates. We conclude that assemblies with at most 34 INP already reach the T-het = -2 degrees C characteristic of this bacterium. Interestingly, we find that T-het is a strongly varying nonmonotonic function of the distance between proteins in the aggregates. This indicates that, to achieve maximum freezing efficiency, bacteria must exert exquisite, subangstrom control of the distance between INP in their membrane.
机译:在寒冷的温度下茁壮成长的生物产生冰结合蛋白,以管理冰的成核和生长。细菌冰核蛋白质(InP)通常是大的,在细胞膜中形成聚集体,而昆虫过度活性防冻蛋白(AFP)可溶于和通常小。实验表明,较大的冰结合蛋白及其聚集体在暖温度下核心冰。然而,对冰结合蛋白的尺寸和聚合的定量理解确定蛋白质核心冰仍然缺乏的温度T-HET。在这里,我们使用分子模拟和成核理论来解决这个问题。该模拟表明2.5nm长的防冻蛋白TMAFP在均匀成核温度的2 +/- 1摄氏度下核肉成核,与最近的实验一致。我们预测,向TMAFP添加冰结合环增加T-HET,但不足以通过细菌INP效率竞争。我们实施准确的程序,以确定使用经典成核理论的有限尺寸表面的T-HET,并且在验证分子模拟中验证蛋白质的T-HET理论后,我们使用它来预测PS的INP的T-HET 。作为聚集体中蛋白质的长度和数量的函数。我们得出结论,具有至多34个InP的组件已经达到该细菌的T-HET = -2℃。有趣的是,我们发现T-HET是聚集体中蛋白质之间距离的强烈非单调功能。这表明,为了实现最大的冷冻效率,细菌必须施加精美,划后控制在膜中的INP之间的距离。

著录项

  • 来源
    《Journal of the American Chemical Society》 |2019年第18期|7439-7452|共14页
  • 作者单位

    Univ Utah Dept Chem 315 South 1400 East Salt Lake City UT 84112 USA;

    Univ Utah Dept Chem 315 South 1400 East Salt Lake City UT 84112 USA;

    Univ Utah Dept Chem 315 South 1400 East Salt Lake City UT 84112 USA;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);美国《化学文摘》(CA);
  • 原文格式 PDF
  • 正文语种 eng
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