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Cloning and Sequencing of cDNA and Genomic DNA Encoding PDM Phosphatase of Fusarium moniliforme

机译:枯萎镰刀菌PDM磷酸酶编码cDNA和基因组DNA的克隆与测序

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摘要

PDM phosphatase was purified approximately 500-fold through six steps from the extract of dried powder of the culture filtrate of Fusarium moniliforme. The purified preparation appeared homogeneous on SDS-PAGE although the protein band was broad. Amino acid sequence information was collected on tryptic peptides from this preparation. cDNA cloning was carried out based on the information. A full-length cDNA was obtained and sequenced. The sequence had an open reading frame of 651 amino acid residues with a molecular mass of 69,988 Da. Cloning and sequencing of the genomic DNA corresponding to the cDNA was also conducted. The deduced amino acid sequence could account for many but not all of the tryptic peptides, suggesting presence of contaminant protein(s). SDS-PAGE analysis after chemical deglycosylation showed two proteins with molecular masses of 58 and 68 kDa. This implied that the 58 kDa protein had been copurified with PDM phosphatase. Homology search showed that PDM phosphatase belongs to the purple acid phosphatase family, which is widely distributed in the biosphere. Sequence data of fungal purple acid phosphatases were collected from the database. Processing of the data revealed presence of two types, whose evolutionary relationships were discussed.
机译:通过六个步骤,从枯萎镰刀菌培养滤液的干燥粉末提取物中纯化PDM磷酸酶约500倍。尽管蛋白条带较宽,但纯化的制剂在SDS-PAGE上显示均质。从该制剂中收集胰蛋白酶肽的氨基酸序列信息。根据该信息进行cDNA克隆。获得全长cDNA并测序。该序列具有651个氨基酸残基的开放阅读框,分子量为69,988 Da。还进行了与cDNA相对应的基因组DNA的克隆和测序。推导的氨基酸序列可以解释许多但不是全部的胰蛋白酶肽,表明存在污染蛋白。化学去糖基化后的SDS-PAGE分析显示两种蛋白质的分子量分别为58和68 kDa。这表明58 kDa蛋白已与PDM磷酸酶共纯化。同源性研究表明,PDM磷酸酶属于紫色酸性磷酸酶家族,广泛分布于生物圈中。从数据库中收集了真菌紫色酸磷酸酶的序列数据。数据处理揭示了两种类型的存在,并讨论了它们的进化关系。

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  • 来源
    《Journal of Biochemistry》 |2006年第6期|813-823|共11页
  • 作者单位

    Department of Chemistry Faculty of Medicine Shimane University 89-1 En-ya-cho Izumo 693-8501;

    Department of Chemistry Graduate School of Science Tohoku University Aramaki Aza-Aoba Aoba-ku Sendai 980-8578;

    and;

    Division of Protein Chemistry Institute for Protein Research Osaka University 3-2 Yamadaoka Suita 565-0871;

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