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Design and implementation of a distributed evolutionary computing software

机译:分布式进化计算软件的设计与实现

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Although evolutionary algorithm is a powerful optimization tool, its computation cost involved in terms of time and hardware resources increases as the size or complexity of the problem increases. One promising approach to overcome this limitation is to exploit the inherent parallelism of evolutionary algorithms by creating an infrastructure necessary to support distributed evolutionary computing using existing Internet and hardware resources. This paper presents a Java-based distributed evolutionary computing software (Paladin-DEC), which enhances the concurrent processing and performance of evolutionary algorithms by allowing inter-communications of subpopulations among various computers over the Internet. Such a distributed system enables individuals to migrate among multiple subpopulations according to some patterns to induce diversity of elite individuals periodically, in a way that simulates the species evolve in natural environment. The Paladin-DEC software is capable of keeping data integrity throughout the computation, and is incorporated with the features of robustness, security, fault tolerance, and work balancing. The effectiveness and advantages of the Paladin-DEC are illustrated upon two case studies of drug scheduling in cancer chemotherapy and searching probe sets of yeast genome.
机译:尽管进化算法是一种功能强大的优化工具,但是随着时间的增加或问题的复杂性的增加,其在时间和硬件资源方面的计算成本也会随之增加。克服这一局限性的一种有前途的方法是通过创建使用现有Internet和硬件资源来支持分布式进化计算所必需的基础架构,从而利用进化算法的固有并行性。本文介绍了一种基于Java的分布式进化计算软件(Paladin-DEC),该软件通过允许Internet上各种计算机之间的子种群之间的相互通信,增强了进化算法的并发处理能力和性能。这种分布式系统使个体能够按照某些模式在多个亚种群之间迁移,从而以模拟物种在自然环境中进化的方式周期性地诱导精英个体的多样性。 Paladin-DEC软件能够在整个计算过程中保持数据完整性,并具有健壮性,安全性,容错性和工作平衡性。在两个案例研究中证明了Paladin-DEC的有效性和优势,该案例涉及癌症化疗中的药物调度以及搜索酵母基因组的探针集。

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