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A Novel Technique To Predict the Solubility of Planar Molecules

机译:一种预测平面分子溶解度的新技术

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摘要

We present a new computational technique to quantify the solubility of planar molecules in a solvent. Solubility is calculated as the critical concentration at which solute molecules cease to stack as columns, but rather aggregate in all directions. An explicit expression for the solubility is obtained, which involves the potential of mean force between two solute molecules as a function of their center-of-mass distance in the limit of infinite dilution. This function can be easily obtained from molecular dynamics simulations involving a pair of solute molecules in a solvent using the umbrella-sampling method. As a validation of our approach, we use a generic coarse-grained molecular model to represent the molecular interactions of polycyclic-aromatic-hydrocarbon. Within that coarse-grained model, the solubility of pyrene and acenaphthene in heptane is estimated through large molecular dynamics simulations and compared to the experimental results. The umbrella-sampling method, applied to single pairs of these molecules in the solvent, provides the values of the critical cluster size in the theoretical model of molecular stacking. Umbrella-sampling simulations for the first members of the polycyclic-aromatic-hydrocarbon series then are used to predict their solubilities through our theoretical method. Within the typical uncertainty associated with theoretical solubility estimates, the agreement of our results with the experimental values is quite remarkable for most of the members of the series in a wide range of molecular masses, which confirms the general validity of the method in the case of planar molecules. Among the molecules explored, agreement with experiment fails for anthracene, for which the experimental solubility is clearly out of the general trend along the polycyclic-aromatic-hydrocarbon series, indicating that the coarse-grained representation used here is not able to capture its peculiarity. The new methodology can be applied to planar molecules to obtain relatively accurate values of solubility at a very low computational cost.
机译:我们提出了一种新的计算技术,以量化平面分子在溶剂中的溶解度。溶解度计算为临界浓度,在该临界浓度下,溶质分子不再以柱状堆积,而是在所有方向聚集。获得了一个明确的溶解度表达式,其中涉及到两个溶质分子之间的平均力随无限稀释范围内其质心距离变化的潜力。使用伞式采样方法,可以从涉及溶剂中的一对溶质分子的分子动力学模拟中轻松获得此功能。作为我们方法的验证,我们使用通用的粗颗粒分子模型来表示多环芳烃的分子相互作用。在该粗粒度模型中,through和and在庚烷中的溶解度是通过大分子动力学模拟估算的,并与实验结果进行了比较。应用于溶剂中这些分子的单对的伞式采样方法在分子堆叠的理论模型中提供了临界簇大小的值。然后,通过我们的理论方法,使用多环芳烃系列中第一个成员的伞采样模拟来预测它们的溶解度。在与理论溶解度估计值相关的典型不确定性范围内,对于该系列中的大多数成员,在宽分子量范围内,我们的结果与实验值的一致性非常出色,这证实了该方法在以下情况下的一般有效性:平面分子。在所探索的分子中,蒽并没有与实验相符,因为蒽的实验溶解度显然不符合多环芳烃系列的总体趋势,这表明此处使用的粗粒度表示法无法捕获其特殊性。可以将新方法应用于平面分子,以非常低的计算成本获得相对准确的溶解度值。

著录项

  • 来源
    《Energy & fuels》 |2016年第12期|10747-10757|共11页
  • 作者单位

    Univ Autonoma Madrid, Dept Fis Teor Mat Condensada, E-28049 Madrid, Spain;

    Univ Autonoma Madrid, Dept Fis Teor Mat Condensada, E-28049 Madrid, Spain;

    Univ Autonoma Madrid, Dept Fis Teor Mat Condensada, E-28049 Madrid, Spain|Univ Autonoma Madrid, Inst Condensed Matter Phys IFIMAC, E-28049 Madrid, Spain;

    Univ Autonoma Madrid, Dept Fis Teor Mat Condensada, E-28049 Madrid, Spain|Univ Autonoma Madrid, Inst Condensed Matter Phys IFIMAC, E-28049 Madrid, Spain;

    Univ Autonoma Madrid, Dept Fis Teor Mat Condensada, E-28049 Madrid, Spain|Univ Autonoma Madrid, Inst Condensed Matter Phys IFIMAC, E-28049 Madrid, Spain;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);美国《生物学医学文摘》(MEDLINE);
  • 原文格式 PDF
  • 正文语种 eng
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