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首页> 外文期刊>BMC Bioinformatics >Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development
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Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development

机译:动态基因组规模的细胞特异性代谢模型揭示了卵巢卵泡开发期间的新型细胞间和细胞内代谢通信

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The maturation of the female germ cell, the oocyte, requires the synthesis and storing of all the necessary metabolites to support multiple divisions after fertilization. Oocyte maturation is only possible in the presence of surrounding, diverse, and changing layers of somatic cells. Our understanding of metabolic interactions between the oocyte and somatic cells has been limited due to dynamic nature of ovarian follicle development, thus warranting a systems approach. Here, we developed a genome-scale metabolic model of the mouse ovarian follicle. This model was constructed using an updated mouse general metabolic model (Mouse Recon 2) and contains several key ovarian follicle development metabolic pathways. We used this model to characterize the changes in the metabolism of each follicular cell type (i.e., oocyte, granulosa cells, including cumulus and mural cells), during ovarian follicle development in vivo. Using this model, we predicted major metabolic pathways that are differentially active across multiple follicle stages. We identified a set of possible secreted and consumed metabolites that could potentially serve as biomarkers for monitoring follicle development, as well as metabolites for addition to in vitro culture media that support the growth and maturation of primordial follicles. Our systems approach to model follicle metabolism can guide future experimental studies to validate the model results and improve oocyte maturation approaches and support growth of primordial follicles in vitro.
机译:雌细胞,卵母细胞的成熟需要合成和储存所有必要的代谢物,以在受精后支持多个分区。卵母细胞成熟仅在周围,多样化和更换的体细胞层层存在下。我们对卵母细胞和体细胞之间的代谢相互作用的理解受到卵巢卵泡开发的动态性质,从而有理由要求系统方法。在这里,我们开发了小鼠卵巢卵泡的基因组级代谢模型。使用更新的鼠标一般代谢模型(鼠标Recon 2)构建该模型,并包含几个关键卵巢卵巢发育代谢途径。我们使用该模型来表征每个滤泡细胞类型的新陈代谢的变化(即,卵母细胞,颗粒细胞,包括积云和壁球菌),在体内卵巢卵泡发育过程中。使用此模型,我们预测了跨多个卵泡阶段差异有效的主要代谢途径。我们鉴定了一系列可能的分泌和消耗的代谢物,其可能作为用于监测卵泡发育的生物标志物,以及用于除了支持原始卵泡的生长和成熟的体外培养基外代谢物。我们的系统方法来模拟卵泡新陈代谢可以引导未来的实验研究来验证模型结果,提高卵母细胞成熟方法,并在体外支持原始卵泡的生长。

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