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Robust dose-response curve estimation applied to high content screening data analysis

机译:稳健的剂量反应曲线估计应用于高含量筛选数据分析

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Background and method Successfully automated sigmoidal curve fitting is highly challenging when applied to large data sets. In this paper, we describe a robust algorithm for fitting sigmoid dose-response curves by estimating four parameters (floor, window, shift, and slope), together with the detection of outliers. We propose two improvements over current methods for curve fitting. The first one is the detection of outliers which is performed during the initialization step with correspondent adjustments of the derivative and error estimation functions. The second aspect is the enhancement of the weighting quality of data points using mean calculation in Tukey’s biweight function. Results and conclusion Automatic curve fitting of 19,236 dose-response experiments shows that our proposed method outperforms the current fitting methods provided by MATLAB?;’s nlinfit nlinfit function and GraphPad’s Prism software.
机译:背景和方法当成功地将S形曲线拟合到大型数据集时,成功进行自动化是非常困难的。在本文中,我们通过估计四个参数(地板,窗,位移和斜率)以及离群值的检测,描述了一种用于拟合S型剂量响应曲线的鲁棒算法。我们提出了对当前曲线拟合方法的两项改进。第一个是异常值的检测,该检测是在初始化步骤中对导数和误差估计函数进行相应调整的。第二个方面是使用Tukey的权重函数中的均值计算来提高数据点的加权质量。结果与结论对19,236个剂量响应实验的自动曲线拟合表明,我们提出的方法优于MATLAB?,nlinfit nlinfit函数和GraphPad的Prism软件提供的当​​前拟合方法。

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