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Integrated analysis reveals key genes with prognostic value in lung adenocarcinoma

机译:综合分析揭示了在肺腺癌中具有预后价值的关键基因

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Background: Lung cancer is one of the most common malignant tumors. Despite advances in lung cancer therapies, prognosis of non-small-cell lung cancer is still unfavorable. The aim of this study was to identify the prognostic value of key genes in lung tumorigenesis. Methods: Differentially expressed genes (DEGs) were screened out by GEO2R from three Gene Expression Omnibus cohorts. Common DEGs were selected for Kyoto Encyclopedia of Genes and Genomes pathway analysis and Gene Ontology enrichment analysis. Protein–-protein interaction networks were constructed by the STRING database and visualized by Cytoscape software. Hub genes, filtered from the CytoHubba, were validated using the Gene Expression Profiling Interactive Analysis database, and their genomic alterations were identified by performing the cBioportal. Finally, overall survival analysis of hub genes was performed using Kaplan–Meier Plotter. Results: From three datasets, 169 DEGs (70 upregulated and 99 downregulated) were identified. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses showed that upregulated DEGs were significantly enriched in cell cycle, p53 pathway, and extracellular matrix–receptor interactions; the downregulated DEGs were significantly enriched in PPAR pathway and tyrosine metabolism. The protein–protein interaction network consisted of 71 nodes and 305 edges, including 49 upregulated and 22 downregulated genes. The hub genes, including AURKB , BUB1B , KIF2C , HMMR , CENPF , and CENPU , were overexpressed compared with the normal group by Gene Expression Profiling Interactive Analysis analysis, and associated with reduced overall survival in lung cancer patients. In the genomic alterations analysis, two hotspot mutations (S2021C/F and E314K/V) were identified in Pfam protein domains. Conclusion: DEGs, including AURKB , BUB1B , KIF2C , HMMR , CENPF , and CENPU , might be potential biomarkers for the prognosis and treatment of lung adenocarcinoma.
机译:背景:肺癌是最常见的恶性肿瘤之一。尽管肺癌疗法取得了进展,但非小细胞肺癌的预后仍然不理想。这项研究的目的是确定关键基因在肺肿瘤发生中的预后价值。方法:通过GEO2R从三个Gene Expression Omnibus队列中筛选出差异表达基因(DEG)。共同的DEG被选为《京都基因与基因组百科全书》途径分析和基因本体论富集分析。蛋白质-蛋白质相互作用网络由STRING数据库构建,并由Cytoscape软件可视化。从CytoHubba筛选出的Hub基因已通过Gene Expression Profiling Interactive Analysis数据库进行了验证,并通过进行cBioportal鉴定了它们的基因组改变。最后,使用Kaplan-Meier绘图仪对中枢基因进行整体生存分析。结果:从三个数据集中,鉴定出169个DEG(上调70个,下调99个)。基因本体论和京都基因与基因组百科全书通路分析表明,上调的DEG在细胞周期,p53通路和细胞外基质-受体相互作用中显着丰富。下调的DEGs在PPAR途径和酪氨酸代谢中显着丰富。蛋白质相互作用网络由71个节点和305个边缘组成,包括49个上调的基因和22个下调的基因。通过基因表达谱交互分析分析,与正常组相比,包括AURKB,BUB1B,KIF2C,HMMR,CENPF和CENPU在内的中枢基因过表达,并且与肺癌患者的整体生存期降低有关。在基因组改变分析中,在Pfam蛋白结构域中发现了两个热点突变(S2021C / F和E314K / V)。结论:DEGs,包括AURKB,BUB1B,KIF2C,HMMR,CENPF和CENPU,可能是预后和治疗肺腺癌的潜在生物标志物。

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