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A novel B- and helper T-cell epitopes-based prophylactic vaccine against Echinococcus granulosus

机译:一种新型的基于B和辅助T细胞抗原决定簇的预防细粒棘球E的疫苗

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Introduction: In this study, we targeted the worm stage of Echinococcus granulosus to design a novel multi-epitope B- and helper T-cell based vaccine construct for immunization of dogs against this multi-host parasite. Methods: The vaccine was designed based on the local Eg14-3-3 antigen (Ag). DNA samples were extracted from the protoscoleces of the infected sheepa??s liver, and then subjected to the polymerase chain reaction (PCR) with 14-3-3 specific forward and reverse primers. For the vaccine designing, several in silico steps were undertaken. Three-dimensional (3D) structure of the local Eg14-3-3 Ag was modeled by EasyModeller software. The protein modeling accuracy was then analyzed via various validation assays. Potential transmembrane helix, signal peptide, post-translational modifications and allergenicity of Eg14-3-3 were evaluated as the preliminary measures of B-cell epitopes (BEs) prediction. Having used many web-servers, a well-designed process was carried out for improved prediction of BEs. High ranked linear and conformational BEs were utilized for engineering the final vaccine construct. Possible T-helper epitopes (TEs) were identified by the molecular docking between 13-mer fragments of the Eg14-3-3 Ag and two high frequent dog class II MHC alleles (i.e., DLA-DRB1*01101 and DRB1*01501). The epitopes coverage was evaluated by Shannona??s variability plot. Results: The final designed construct was analyzed based on different physicochemical properties, which was then codon optimized for high-level expression in Escherichia coli k12. This minigene construct is the first dog-specific epitopic vaccine construct that is established based on TEs with high-binding affinity to canine MHC alleles. Conclusion: This in silico study is the first part of a multi-antigenic vaccine designing work that represents as a novel dog-specific vaccine against E. granulosus. Here, we present key data on the step-by-step methodologies used for designing this de novo vaccine, which is under comprehensive in vivo investigations.
机译:简介:在这项研究中,我们针对细粒棘球oc虫的蠕虫阶段设计了一种新颖的基于多表位B细胞和辅助T细胞的疫苗构建体,用于针对这种多宿主寄生虫的狗免疫接种。方法:该疫苗是根据当地的Eg14-3-3抗原(Ag)设计的。从被感染的绵羊的肝脏的原核中提取DNA样品,然后用14-3-3特异性正向和反向引物进行聚合酶链反应(PCR)。为了设计疫苗,进行了一些计算机步骤。本地Eg14-3-3 Ag的三维(3D)结构由EasyModeller软件建模。然后通过各种验证测定法分析蛋白质建模的准确性。评价潜在的跨膜螺旋,信号肽,Eg14-3-3的翻译后修饰和变应原性,作为B细胞表位(BEs)预测的初步措施。使用了许多Web服务器之后,进行了精心设计的过程以改善BE的预测。高等级的线性和构象BE被用于工程化最终疫苗构建体。通过Eg14-3-3 Ag的13-mer片段与两个高频率狗II类MHC等位基因(即DLA-DRB1 * 01101和DRB1 * 01501)之间的分子对接来鉴定可能的T-辅助表位(TEs)。通过Shannona的变异图评估了抗原决定簇的覆盖范围。结果:根据不同的理化特性对最终设计的构建体进行了分析,然后对其进行密码子优化以在大肠杆菌k12中进行高水平表达。这种小基因构建体是第一个基于TE的犬特异性表位疫苗构建体,该TE具有对犬MHC等位基因的高结合亲和力。结论:此计算机模拟研究是多抗原疫苗设计工作的第一部分,该工作代表了一种针对颗粒大肠杆菌的新型狗特异性疫苗。在这里,我们介绍了用于设计这种从头疫苗的分步方法的关键数据,该方法正在全面的体内研究中。

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