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Analytical approximations for the amplitude and period of a relaxation oscillator

机译:弛豫振荡器的振幅和周期的解析近似

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Background Analysis and design of complex systems benefit from mathematically tractable models, which are often derived by approximating a nonlinear system with an effective equivalent linear system. Biological oscillators with coupled positive and negative feedback loops, termed hysteresis or relaxation oscillators, are an important class of nonlinear systems and have been the subject of comprehensive computational studies. Analytical approximations have identified criteria for sustained oscillations, but have not linked the observed period and phase to compact formulas involving underlying molecular parameters. Results We present, to our knowledge, the first analytical expressions for the period and amplitude of a classic model for the animal circadian clock oscillator. These compact expressions are in good agreement with numerical solutions of corresponding continuous ODEs and for stochastic simulations executed at literature parameter values. The formulas are shown to be useful by permitting quick comparisons relative to a negative-feedback represillator oscillator for noise (10× less sensitive to protein decay rates), efficiency (2× more efficient), and dynamic range (30 to 60 decibel increase). The dynamic range is enhanced at its lower end by a new concentration scale defined by the crossing point of the activator and repressor, rather than from a steady-state expression level. Conclusion Analytical expressions for oscillator dynamics provide a physical understanding for the observations from numerical simulations and suggest additional properties not readily apparent or as yet unexplored. The methods described here may be applied to other nonlinear oscillator designs and biological circuits.
机译:复杂系统的背景分析和设计得益于数学上易处理的模型,这些模型通常是通过将非线性系统与有效等效线性系统近似来得出的。具有正负反馈回路耦合的生物振荡器,称为磁滞或张弛振荡器,是非线性系统的重要类别,并且已成为全面计算研究的主题。分析近似已确定了持续振荡的标准,但未将观察到的周期和相位与涉及基础分子参数的紧凑公式联系起来。结果我们据我们所知,给出了动物生物钟振荡器经典模型的周期和幅度的第一个分析表达式。这些紧凑的表达式与相应的连续ODE的数值解以及以文献参数值执行的随机模拟非常吻合。通过相对于负反馈预硅化器振荡器进行快速比较,可以证明这些公式非常有用,这些振荡器的噪声(对蛋白质衰减速率的敏感性降低10倍),效率(效率提高2倍)和动态范围(增加30至60分贝) 。通过激活器和阻遏物的交点定义的新浓度范围,而不是稳态表达水平,可以在动态范围的下端提高动态范围。结论振荡器动力学的解析表达式为从数值模拟中观察到的现象提供了物理理解,并暗示了尚不明显或尚未探索的其他特性。这里描述的方法可以应用于其他非线性振荡器设计和生物电路。

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