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A Novel Multifunctional β- N -Acetylhexosaminidase Revealed through Metagenomics of an Oil-Spilled Mangrove

机译:通过溢油的红树林的代谢组学揭示一种新型的多功能β-N-乙酰己糖胺酶

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The use of culture-independent approaches, such as metagenomics, provides complementary access to environmental microbial diversity. Mangrove environments represent a highly complex system with plenty of opportunities for finding singular functions. In this study we performed a functional screening of fosmid libraries obtained from an oil contaminated mangrove site, with the purpose of identifying clones expressing hydrolytic activities. A novel gene coding for a β- N -acetylhexosaminidase with 355 amino acids and 43KDa was retrieved and characterized. The translated sequence showed only 38% similarity to a β- N -acetylhexosaminidase gene in the genome of Veillonella sp. CAG:933, suggesting that it might constitute a novel enzyme. The enzyme was expressed, purified, and characterized for its enzymatic activity on carboxymethyl cellulose, p-Nitrophenyl-2acetamide-2deoxy-β- d -glucopyranoside, p-Nitrophenyl-2acetamide-2deoxy-β- d -galactopyranoside, and 4-Nitrophenyl β- d -glucopyranoside, presenting β- N -acetylglucosaminidase, β-glucosidase, and β-1,4-endoglucanase activities. The enzyme showed optimum activity at 30 °C and pH 5.5. The characterization of the putative novel β- N -acetylglucosaminidase enzyme reflects similarities to characteristics of the environment explored, which differs from milder conditions environments. This work exemplifies the application of cultivation-independent molecular techniques to the mangrove microbiome for obtaining a novel biotechnological product.
机译:使用不依赖于文化的方法(例如宏基因组学)可以互补地获取环境微生物多样性。红树林环境代表了一个高度复杂的系统,具有许多寻找奇异功能的机会。在这项研究中,我们对从受油污染的红树林场所获得的fosmid库进行了功能筛选,目的是鉴定表达水解活性的克隆。检索并鉴定了编码具有355个氨基酸和43KDa的β-N-乙酰基己糖胺酶的新基因。在Veillonella sp的基因组中,翻译的序列与β-N-乙酰基己糖胺酶基因仅显示38%的相似性。 CAG:933,表明它可能构成一种新型酶。表达,纯化和表征了该酶对羧甲基纤维素,对硝基苯基-2乙酰胺-2脱氧-β-d-吡喃葡萄糖苷,对硝基苯基-2乙酰胺-2脱氧-β-d-吡喃半乳糖苷和4-硝基苯基β的酶活性。 -d-吡喃葡萄糖苷,表现出β-N-乙酰氨基葡糖苷酶,β-葡糖苷酶和β-1,4-内葡聚糖酶活性。该酶在30°C和pH 5.5下显示最佳活性。推定的新型β-N-乙酰氨基葡糖苷酶的特征反映了与所研究环境特征的相似性,与温和条件环境不同。这项工作举例说明了不依赖栽培的分子技术在红树林微生物组中的应用,以获得一种新的生物技术产品。

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