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Attractor Stabilizability of Boolean Networks With Application to Biomolecular Regulatory Networks

机译:布尔网络吸引子的稳定性及其在生物分子调控网络中的应用

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摘要

Stabilizability of Boolean networks (BNs) has been addressed in some recent research works. One of the most widespread applications of BNs is the analysis and control of biomolecular regulatory networks. Pertinent to this field of application, we introduce the concept of attractor stabilizability of a BN by flipping a subset of its nodes. This concept captures the possibility of enforcing a BN to converge from any of its attractors to a desired stable state by flipping members of a subset of network variables just once. Our approach is based on the algebraic state-space representation of BNs using semi-tensor product of matrices. In this work, after introducing some new matrix tools, we use them to construct a characteristic matrix called attractor stabilizability matrix. Then, this matrix is used to derive necessary and sufficient conditions for attractor stabilizability of a BN. Two algorithms are then proposed to identify the stabilizing kernel for the target attractor of a BN. The developed approach is successfully applied to several BN models of real biomolecular regulatory networks.
机译:布尔网络(BN)的稳定性已在一些最近的研究工作中得到解决。 BN的最广泛应用之一是生物分子调控网络的分析和控制。与该应用领域相关,我们通过翻转BN节点的子集来介绍BN吸引子稳定性的概念。通过仅翻转网络变量子集的成员一次,该概念就可以捕获强制BN从其任何吸引子收敛到所需稳定状态的可能性。我们的方法基于使用矩阵的半张量积的BN的代数状态空间表示。在这项工作中,在介绍了一些新的矩阵工具之后,我们使用它们来构建一个称为吸引子稳定性矩阵的特征矩阵。然后,该矩阵用于导出BN吸引子稳定的必要条件和充分条件。然后提出了两种算法来识别BN目标吸引子的稳定核。所开发的方法已成功应用于实际生物分子调控网络的多个BN模型。

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