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Attractor Stabilizability of Boolean Networks With Application to Biomolecular Regulatory Networks

机译:Bolean Networks对生物分子监管网络的吸引力稳定性

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摘要

Stabilizability of Boolean networks (BNs) has been addressed in some recent research works. One of the most widespread applications of BNs is the analysis and control of biomolecular regulatory networks. Pertinent to this field of application, we introduce the concept of attractor stabilizability of a BN by flipping a subset of its nodes. This concept captures the possibility of enforcing a BN to converge from any of its attractors to a desired stable state by flipping members of a subset of network variables just once. Our approach is based on the algebraic state-space representation of BNs using semi-tensor product of matrices. In this work, after introducing some new matrix tools, we use them to construct a characteristic matrix called attractor stabilizability matrix. Then, this matrix is used to derive necessary and sufficient conditions for attractor stabilizability of a BN. Two algorithms are then proposed to identify the stabilizing kernel for the target attractor of a BN. The developed approach is successfully applied to several BN models of real biomolecular regulatory networks.
机译:在最近的一些研究工作中已经解决了布尔网络(BNS)的稳定性。 BNS最广泛应用之一是生物分子监管网络的分析和控制。与该应用领域相关,我们通过翻转其节点的子集来介绍BN的吸引子稳定性的概念。该概念捕获通过仅刚刚一次网络变量的子集的成员,强制执行BN将BN与其中任何一个吸引子收敛到所需的稳定状态。我们的方法基于使用矩阵的半张量产品的BNS的代数状态空间表示。在这项工作中,在引入一些新的矩阵工具后,我们使用它们来构造一个名为吸引子稳定性矩阵的特征矩阵。然后,该矩阵用于导出BN的吸引力稳定性的必要和充分条件。然后提出两种算法以识别BN的目标吸引子的稳定核。开发的方法成功应用于几种实际生物分子监管网络的BN模型。

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