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Molecular Dynamics of Proteins Investigated by NMR Relaxation Methods

机译:NMR弛豫方法研究蛋白质的分子动力学

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摘要

The nucleax magnetic resonance relaxation times of solvent water nuclei are known to decrease upon addition of diamagnetic solute protein. For this reason NMR relaxation methods are able to provide information on molecular dynamics changes of water protons and their interaction with macromolecules' surfaces. We present results of measurements of relaxation rates R_1 = 1/T_1, R_2 = 1/T_2 and R_(1ρ) = 1/T_(1ρ) in the rotating frame for three proteins: chicken egg white lysozyme, egg white albumin, and bovine serum albumin, obtained at proton resonant frequency of 60 MHz. Besides the relaxation rates dependences on concentration in the 4-23% (g/100 g solution) range, the analysis of the Carr-Purcell-Meiboom-Gill CPMG multi-echo T_2 experiments with variable pulse rate (T) was performed. The dependences of relaxation rates on protein concentration are linear at low concentration. When protein concentration increases the slope of the straight line rapidly changes at so-called "critical" concentration which depends on MW of the diluted protein. Investigated dispersion of T_2, obtained using the CPMG method with a variable pulse rate, for concentrations higher and lower than the "critical" one, exhibits unequal behavior. At high concentration one-exponential curves and at low concentration two-exponential curves correspond closely with experimental data. The obtained parameters of exponents allow an estimation of the ratio of the amount of water with the determined motion freedom, that is free and bounded water, in solution. We showed that the CPMG dispersion method applied to aqueous protein solutions may widen the current understanding of the nature of molecular dynamics of hydrated water protons in non-perturbed environment.
机译:已知在添加抗磁性溶质蛋白时,溶剂水核的核磁共振弛豫时间减少。因此,NMR弛豫方法能够提供有关水质子分子动力学变化及其与大分子表面相互作用的信息。我们提供了三种蛋白质在旋转框架中的松弛率R_1 = 1 / T_1,R_2 = 1 / T_2和R_(1ρ)= 1 / T_(1ρ)的测量结果:鸡蛋白清蛋白,蛋清白蛋白和牛血清白蛋白,在60 MHz的质子共振频率下获得。除了弛豫率取决于浓度在4-23%(g / 100 g溶液)范围外,还对可变脉冲率(T)的Carr-Purcell-Meiboom-Gill CPMG多回波T_2实验进行了分析。低浓度下松弛速率对蛋白质浓度的依赖性是线性的。当蛋白质浓度增加时,直线的斜率在所谓的“临界”浓度下迅速变化,该浓度取决于稀释蛋白质的分子量。对于浓度高于和低于“临界”浓度的浓度,使用CPMG方法以可变脉冲频率获得的T_2的研究分散度表现出不同的行为。在高浓度下,一指数曲线和在低浓度下,二指数曲线与实验数据紧密对应。所获得的指数参数允许估计溶液中具有确定的运动自由度的水量(即自由水和有界水)的比率。我们表明,CPMG分散法应用于蛋白质水溶液可以拓宽当前对无扰动环境中水化质子的分子动力学性质的了解。

著录项

  • 来源
    《Acta Physica Polonica》 |2014年第4期|907-910|共4页
  • 作者单位

    Institute of Physics, Pedagogical University, Podchorazych 2, 30-084 Krakow, Poland;

    Institute of Physics, Jagiellonian University, W.S. Reymonta 4, 30-059 Krakow, Poland;

  • 收录信息 美国《科学引文索引》(SCI);美国《工程索引》(EI);
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

    nuclear magnetic resonance and relaxation;

    机译:核磁共振与弛豫;

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