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Generalised approach to modelling a three-tiered microbial food-web

机译:建模三层微生物食物网的通用方法

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摘要

The complexity of the anaerobic digestion process has motivated the development of complex models, such as the widely used Anaerobic Digestion Model No. 1. However, this complexity makes it intractable to identify the stability profile coupled to the asymptotic behaviour of existing steady-states as a function of conventional chemostat operating parameters (substrate inflow concentration and dilution rate). In a previous study this model was simplified and reduced to its very backbone to describe a three-tiered chlorophenol mineralising food-web, with its stability analysed numerically using consensus values for the various biological parameters of the Monod growth functions. Steady-states where all organisms exist were always stable and non-oscillatory. Here we investigate a generalised form of this three-tiered food-web, whose kinetics do not rely on the specific kinetics of Monod form. The results are valid for a large class of growth kinetics as long as they keep the signs of their derivatives. We examine the existence and stability of the identified steady-states and find that, without a maintenance term, the stability of the system may be characterised analytically. These findings permit a better understanding of the operating region of the bifurcation diagram where all organisms exist, and its dependence on the biological parameters of the model. For the previously studied Monod kinetics, we identify four interesting cases that show this dependence of the operating diagram with respect to the biological parameters. When maintenance is included, it is necessary to perform numerical analysis. In both cases we verify the discovery of two important phenomena; i) the washout steady-state is always stable, and ii) a switch in dominance between two organisms competing for hydrogen results in the system becoming unstable and a loss in viability. We show that our approach results in the discovery of an unstable operating region in its positive steady-state, where all three organisms exist, a fact that has not been reported in a previous numerical study. This type of analysis can be used to determine critical behaviour in microbial communities in response to changing operating conditions.
机译:厌氧消化过程的复杂性推动了复杂模型的发展,例如广泛使用的1号厌氧消化模型。但是,这种复杂性使得难以将与现有稳态的渐近行为相关联的稳定性曲线识别为与传统的恒化器操作参数(底物流入浓度和稀释率)有关。在先前的研究中,该模型被简化并简化为描述三层氯酚矿化食物网的骨架,并使用针对Monod生长功能的各种生物学参数的共识值对其稳定性进行了数值分析。所有生物均存在的稳态始终稳定且无振荡。在这里,我们研究了这种三层食物网的一般形式,其动力学不依赖于Monod形式的特定动力学。该结果对于一大类生长动力学有效,只要它们保持其衍生物的迹象即可。我们检查了确定的稳态的存在和稳定性,发现在没有维护期限的情况下,系统的稳定性可以通过分析来表征。这些发现可以更好地理解所有生物均存在的分叉图的操作区域,以及其对模型生物学参数的依赖性。对于以前研究的Monod动力学,我们确定了四个有趣的案例,这些案例显示了操作图相对于生物学参数的这种依赖性。包括维护在内,有必要进行数值分析。在这两种情况下,我们都验证了两个重要现象的发现。 i)洗脱稳态始终是稳定的,并且ii)争夺氢的两种生物之间的主导权转换导致系统变得不稳定并丧失生存能力。我们表明,我们的方法导致发现了在其所有三个生物都存在的正稳态下的不稳定工作区域,这一事实在先前的数值研究中尚未得到报道。这种类型的分析可用于确定微生物群落中响应操作条件变化的关键行为。

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