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A Versatile Semester-Long Course-Based Undergraduate Research Experience using Optogenetics and RNAi to Identify Genes Important for Synapse Function

机译:为期一学期的多才多艺的基于课程的本科研究经验使用光遗传学和 RNAi 来识别对突触功能很重要的基因

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摘要

Compared to traditional teaching laboratory activities, course-based undergraduate research experiences (CUREs) can increase student engagement and confidence, improve scientific literacy, enhance critical thinking, and promote accessibility in STEM. Here we describe a versatile CURE for an upper-level Neurobiology course that incorporates genetic, molecular, cellular, and behavioral experiments into a semester-long investigation to identify genes important for glutamate synapse formation or function in C. elegans. Following introduction to the CURE approach and basic C. elegans techniques, students construct their own low-cost optogenetics rigs, which we describe in detail here, to activate a mechanosensory escape reflex via photostimulation. They then perform a small-scale RNAi screen with this light-activated behavioral readout. Once a gene of interest is identified, students submit a proposal to investigate the role of this gene in nervous system function and spend the rest of the semester carrying out follow-up experiments using mutant strains. We also describe ways in which this CURE can be modified depending on the pedagogical objectives, availability of materials, or research interests of the instructor. Participating in this lab significantly enhanced students’ abilities to see themselves as STEM professionals and prompted students to report substantial gains in skills critical for entry into and success in graduate and medical schools. In addition to the benefits CUREs provide to students, faculty benefit from the generation of preliminary data and training of students for potential independent research projects.
机译:与传统的教学实验室活动相比,基于课程的本科生研究体验 (CURE) 可以提高学生的参与度和信心,提高科学素养,增强批判性思维,并促进 STEM 的可访问性。在这里,我们描述了一种针对高级神经生物学课程的多功能 CURE,该课程将遗传、分子、细胞和行为实验纳入为期一学期的调查中,以确定对秀丽隐杆线虫中谷氨酸突触形成或功能重要的基因。在介绍 CURE 方法和基本的秀丽隐杆线虫技术之后,学生构建了自己的低成本光遗传学装置,我们在这里详细描述了这些装置,以通过光刺激激活机械感应逃逸反射。然后,他们使用这种光激活行为读数进行小规模 RNAi 筛选。一旦确定了感兴趣的基因,学生就会提交一份提案,以研究该基因在神经系统功能中的作用,并在学期的剩余时间里使用突变菌株进行后续实验。我们还描述了可以根据教学目标、材料的可用性或教师的研究兴趣来修改此 CURE 的方法。参加这个实验室显著提高了学生将自己视为 STEM 专业人士的能力,并促使学生报告说,在进入研究生院和医学院并取得成功的关键技能方面取得了实质性的进步。除了 CURE 为学生提供的好处外,教师还受益于初步数据的生成和学生对潜在独立研究项目的培训。

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