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Lytic Capsule-Specific Acinetobacter Bacteriophages Encoding Polysaccharide-Degrading Enzymes

机译:编码多糖降解酶的裂解胶囊特异性不动杆菌噬菌体

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摘要

The genus Acinetobacter comprises both environmental and clinically relevant species associated with hospital-acquired infections. Among them, Acinetobacter baumannii is a critical priority bacterial pathogen, for which the research and development of new strategies for antimicrobial treatment are urgently needed. Acinetobacter spp. produce a variety of structurally diverse capsular polysaccharides (CPSs), which surround the bacterial cells with a thick protective layer. These surface structures are primary receptors for capsule-specific bacteriophages, that is, phages carrying tailspikes with CPS-depolymerizing/modifying activities. Phage tailspike proteins (TSPs) exhibit hydrolase, lyase, or esterase activities toward the corresponding CPSs of a certain structure. In this study, the data on all lytic capsule-specific phages infecting Acinetobacter spp. with genomes deposited in the NCBI GenBank database by January 2024 were summarized. Among the 149 identified TSPs encoded in the genomes of 143 phages, the capsular specificity (K specificity) of 46 proteins has been experimentally determined or predicted previously. The specificity of 63 TSPs toward CPSs, produced by various Acinetobacter K types, was predicted in this study using a bioinformatic analysis. A comprehensive phylogenetic analysis confirmed the prediction and revealed the possibility of the genetic exchange of gene regions corresponding to the CPS-recognizing/degrading parts of different TSPs between morphologically and taxonomically distant groups of capsule-specific Acinetobacter phages.
机译:不动杆菌属包括与医院获得性感染相关的环境和临床相关物种。其中,鲍曼不动杆菌是一种关键的优先细菌病原体,迫切需要研究和开发新的抗菌治疗策略。不动杆菌属产生各种结构多样的荚膜多糖 (CPS),这些多糖用厚厚的保护层包围细菌细胞。这些表面结构是胶囊特异性噬菌体的主要受体,即携带具有 CPS 解聚/修饰活性的尾刺的噬菌体。噬菌体尾刺蛋白 (TSP) 对特定结构的相应 CPS 表现出水解酶、裂解酶或酯酶活性。在这项研究中,总结了到 2024 年 1 月所有感染不动杆菌属的裂解胶囊特异性噬菌体的数据,其基因组存放在 NCBI GenBank 数据库中。在 143 个噬菌体基因组中编码的 149 个已鉴定的 TSP 中,46 个蛋白质的荚膜特异性 (K 特异性) 之前已经通过实验确定或预测。本研究使用生物信息学分析预测了 63 个 TSP 对各种不动杆菌 K 类型产生的 CPS 的特异性。全面的系统发育分析证实了这一预测,并揭示了在形态学和分类学上距离较远的荚膜特异性不动杆菌噬菌体群之间,对应于 CPS 识别/降解不同 TSP 部分的基因区域遗传交换的可能性。

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