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Selection of Reference Genes for Normalization of Gene Expression in

机译:基因表达归一化参考基因的选择

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摘要

Zygentoma occupies a key evolutionary position for understanding the evolution of insect metamorphosis but has received little attention in terms of genetic analysis. To develop functional genomic studies in this insect, we evaluated five candidate internal reference genes for quantitative RT-PCR (qPCR) studies from Thermobia domestica, a representative species of Zygentoma, including Actin 5C (Actin5C), Elongation factor-1 alpha (EF1A), Ribosome protein S26 (RPS26), Ribosome protein L32 (RPL32), and Superoxide dismutase 2 (SOD2), at different developmental stages, in various body parts, and under dsRNA microinjection and starvation stresses, using four algorithms (delta Ct, geNorm, NormFinder and BestKeeper) and a comparative algorithm (RefFinder). Specific suitable reference genes were recommended across specific experimental conditions, and the combination of RPS26 and RPL32 was appropriate for all tested samples. Employing our selected reference gene combination, we investigated the gene expression pattern of Myoglianin (Myo), a crucial gene-regulating insect metamorphosis, in ametabolous T. domestica, and demonstrated the efficiency of RNA interference (RNAi) in firebrat nymphs. This study provides a basis for reliable quantitative studies of genes and greatly benefits evolutionary and functional genomics studies in Zygentoma.
机译:Zygertoma占据了解昆虫变态的演变,但在遗传分析方面得到了很少的关注。为了在该昆虫中开发功能基因组研究,我们评估了来自Thermobia domestica的定量RT-PCR(QPCR)研究的五个候选内部参考基因,Zygentoma的代表性物种,包括肌动蛋白5C(Actin5C),伸长因子-1α(EF1A) ,核糖体蛋白S26(RPS26),核糖体蛋白L32(RPL32)和超氧化物歧化酶2(SOD2),在不同的发育阶段,各种身体部位,使用四种算法(Delta CT,Genorm, randfinder和bestkeeper)和比较算法(Reffinder)。在特定的实验条件下建议使用特异性合适的参考基因,并且RPS26和RPL32的组合适用于所有测试样品。使用我们所选参考基因组合,我们研究了肌蛋白(Myo)的基因表达模式,其在ametabolousTimentaa中的一个至关重要的基因调节昆虫变态,并证明了RNA干扰(RNAi)在Firebrat若虫中的效率。本研究为基因的可靠定量研究提供了基础,并且在Zygrentoma中具有大大益处的进化和功能基因组学研究。

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