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Bayesian Penalized Spline Models for the Analysis of Spatio-Temporal Count Data

机译:时空计数数据分析的贝叶斯惩罚样条模型

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摘要

In recent years, the availability of infectious disease counts in time and space has increased, and consequently there has been renewed interest in model formulation for such data. In this paper, we describe a model that was motivated by the need to analyze hand, foot and mouth disease (HFMD) surveillance data in China. The data are aggregated by geographical areas and by week, with the aims of the analysis being to gain insight into the space-time dynamics and to make short-term prediction to implement public health campaigns in those areas with a large predicted disease burden. The model we develop decomposes disease risk into marginal spatial and temporal components, and a space-time interaction piece. The latter is the crucial element, and we use a tensor product spline model with a Markov random field prior on the coefficients of the basis functions. The model can be formulated as a Gaussian Markov random field and so fast computation can be carried out using the integrated nested Laplace approximation (INLA) approach. A simulation study shows that the model can pick up complex space-time structure and our analysis of HFMD data in the central north region of China provides new insights into the dynamics of the disease.
机译:近年来,在时间和空间上传染病计数的可用性增加了,因此,人们对这种数据的模型制定有了新的兴趣。在本文中,我们描述了一个模型,该模型是由于需要分析中国的手足口病(HFMD)监测数据而产生的。这些数据是按地理区域和每周汇总的,分析的目的是深入了解时空动态,并进行短期预测,以在那些疾病预测负荷很大的地区实施公共卫生运动。我们开发的模型将疾病风险分解为边际的空间和时间组成部分,以及时空相互作用部分。后者是关键要素,我们在基函数系数之前使用具有Markov随机场的张量积样条模型。该模型可以公式化为高斯马尔可夫随机场,因此可以使用集成嵌套拉普拉斯近似(INLA)方法进行快速计算。仿真研究表明,该模型可以适应复杂的时空结构,而我们对中国中北部地区手足口病数据的分析为该疾病的动力学提供了新的见解。

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