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Identification of Reference Genes for Quantitative Real Time PCR Assays in Aortic Tissue of Syrian Hamsters with Bicuspid Aortic Valve

机译:二尖瓣主动脉瓣叙利亚仓鼠主动脉组织中实时荧光定量PCR检测参考基因的鉴定

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摘要

Bicuspid aortic valve (BAV) is the most frequent congenital cardiac malformation in humans, and appears frequently associated with dilatation of the ascending aorta. This association is likely the result of a common aetiology. Currently, a Syrian hamster strain with a relatively high (∼40%) incidence of BAV constitutes the only spontaneous animal model of BAV disease. The characterization of molecular alterations in the aorta of hamsters with BAV may serve to identify pathophysiological mechanisms and molecular markers of disease in humans. In this report, we evaluate the expression of ten candidate reference genes in aortic tissue of hamsters in order to identify housekeeping genes for normalization using quantitative real time PCR (RT-qPCR) assays. A total of 51 adult (180–240 days old) and 56 old (300–440 days old) animals were used. They belonged to a control strain of hamsters with normal, tricuspid aortic valve (TAV; n = 30), or to the affected strain of hamsters with TAV (n = 45) or BAV (n = 32). The expression stability of the candidate reference genes was determined by RT-qPCR using three statistical algorithms, GeNorm, NormFinder and Bestkeeper. The expression analyses showed that the most stable reference genes for the three algorithms employed were Cdkn1β, G3pdh and Polr2a. We propose the use of Cdkn1β, or both Cdkn1β and G3pdh as reference genes for mRNA expression analyses in Syrian hamster aorta.
机译:二尖瓣主动脉瓣(BAV)是人类中最常见的先天性心脏畸形,并且似乎经常与升主动脉扩张相关。这种关联可能是常见病因的结果。目前,叙利亚仓鼠菌株中BAV的发生率较高(约40%),是BAV疾病的唯一自发动物模型。 BAV仓鼠主动脉中分子改变的特征可能有助于鉴定人类疾病的病理生理机制和分子标记。在本报告中,我们评估了十个候选参考基因在仓鼠主动脉组织中的表达,以便使用定量实时PCR(RT-qPCR)分析鉴定管家基因以进行标准化。总共使用了51只成年(180-240天大)和56只(300-440天大)动物。它们属于具有正常三尖瓣主动脉瓣的仓鼠对照菌株(TAV; n = 30),或属于具有TAV(n = 45)或BAV(n = 32)的受影响的仓鼠菌株。候选参考基因的表达稳定性通过RT-qPCR使用GeNorm,NormFinder和Bestkeeper三种统计算法确定。表达分析表明,使用的三种算法最稳定的参考基因是Cdkn1β,G3pdh和Polr2a。我们建议使用Cdkn1β或Cdkn1β和G3pdh作为参考基因进行叙利亚仓鼠主动脉mRNA表达分析。

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