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Self-assembly and soluble aggregate behavior of computationally designed coiled-coil peptide bundles

机译:计算设计的卷曲螺旋肽束的自组装和可溶性聚集体行为

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摘要

Coiled-coil peptides have proven useful in a range of materials applications ranging from the formation of well-defined fibrils to responsive hydrogels. The ability to design from first principles their oligomerization and subsequent higher order assembly offers their expanded use in producing new materials. Toward these ends, homo-tetrameric, antiparallel, coiled-coil, peptide bundles have been designed computationally, synthesized via solid-phase methods, and their solution behavior characterized. Two different bundle-forming peptides were designed and examined. Within the targeted coiled coil structure, both bundles contained the same hydrophobic core residues. However, different exterior residues on the two different designs yielded sequences with different distributions of charged residues and two different expected isoelectric points of pI 4.4 and pI 10.5. Both coiled-coil bundles were extremely stable with respect to temperature (Tm > 80 C) and remained soluble in solution even at high (millimolar) peptide concentrations. The coiled-coil tetramer was confirmed to be the dominant species in solution by analytical sedimentation studies and by small-angle neutron scattering, where the scattering form factor is well represented by a cylinder model with the dimensions of the targeted coiled coil. At high concentrations (5–15 mM), evidence of interbundle structure was observed via neutron scattering. At these concentrations, the synthetic bundles form soluble aggregates, and interbundle distances can be determined via a structure factor fit to scattering data. The data support the successful design of robust coiled-coil bundles. Despite their different sequences, each sequence forms loosely associated but soluble aggregates of the bundles, suggesting similar dissociated states for each. The behavior of the dispersed bundles is similar to that observed for natural proteins.
机译:线圈螺旋肽已被证明可用于多种材料应用中,从形成明确的原纤维到反应性水凝胶。从第一原理设计其低聚和随后的更高阶组装的能力提供了它们在生产新材料中的扩展用途。为此,已经设计了均四聚体,反平行,卷曲螺旋肽束,并通过固相方法合成了肽束,并对它们的溶液行为进行了表征。设计并检查了两种不同的成束肽。在目标卷曲螺旋结构内,两个束都包含相同的疏水核残基。然而,两种不同设计的不同外部残基产生的序列具有不同的带电残基分布以及两个不同的等电点pI 4.4和pI 10.5。两个盘绕的管束都相对于温度(Tm> 80 C)极其稳定,即使在高(毫摩尔)肽浓度下也可溶于溶液。通过分析沉降研究和小角度中子散射,确认盘绕四聚体是溶液中的主要物质,其中散射形状因数由具有目标盘绕尺寸的圆柱模型很好地表示。在高浓度(5–15 mM)下,通过中子散射观察到束间结构的证据。在这些浓度下,合成束形成可溶的聚集体,并且束间距离可以通过适合散射数据的结构因子确定。数据支持了坚固的盘绕钢卷束的成功设计。尽管它们的序列不同,但是每个序列形成束的松散相关但可溶的聚集体,表明每个束的解离状态相似。分散束的行为类似于天然蛋白质的行为。

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