MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction

摘要

>Motivation: MIEC-SVM is a structure-based method for predicting protein recognition specificity. Here, we present an automated MIEC-SVM pipeline providing an integrated and user-friendly workflow for construction and application of the MIEC-SVM models. This pipeline can handle standard amino acids and those with post-translational modifications (PTMs) or small molecules. Moreover, multi-threading and support to Sun Grid Engine (SGE) are implemented to significantly boost the computational efficiency.>Availability and implementation: The program is available at .>Contact: >Supplementary information>: available at Bioinformatics online.