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Influences of Infaunal Burrows on the Community Structure and Activity of Ammonia-Oxidizing Bacteria in Intertidal Sediments

机译:粪便对潮间带沉积物氨氧化细菌群落结构和活性的影响

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摘要

Influences of infaunal burrows constructed by the polychaete (Tylorrhynchus heterochaetus) on O2 concentrations and community structures and abundances of ammonia-oxidizing bacteria (AOB) and nitrite-oxidizing bacteria (NOB) in intertidal sediments were analyzed by the combined use of a 16S rRNA gene-based molecular approach and microelectrodes. The microelectrode measurements performed in an experimental system developed in an aquarium showed direct evidence of O2 transport down to a depth of 350 mm of the sediment through a burrow. The 16S rRNA gene-cloning analysis revealed that the betaproteobacterial AOB communities in the sediment surface and the burrow walls were dominated by Nitrosomonas sp. strain Nm143-like sequences, and most of the clones in Nitrospira-like NOB clone libraries of the sediment surface and the burrow walls were related to the Nitrospira marina lineage. Furthermore, we investigated vertical distributions of AOB and NOB in the infaunal burrow walls and the bulk sediments by real-time quantitative PCR (Q-PCR) assay. The AOB and Nitrospira-like NOB-specific 16S rRNA gene copy numbers in the burrow walls were comparable with those in the sediment surfaces. These numbers in the burrow wall at a depth of 50 to 55 mm from the surface were, however, higher than those in the bulk sediment at the same depth. The microelectrode measurements showed higher NH4+ consumption activity at the burrow wall than those at the surrounding sediment. This result was consistent with the results of microcosm experiments showing that the consumption rates of NH4+ and total inorganic nitrogen increased with increasing infaunal density in the sediment. These results clearly demonstrated that the infaunal burrows stimulated O2 transport into the sediment in which otherwise reducing conditions prevailed, resulting in development of high NH4+ consumption capacity. Consequently, the infaunal burrow became an important site for NH4+ consumption in the intertidal sediment.
机译:结合16S rRNA基因分析了潮间带沉积物多毛cha(Tylorrhynchus heterochaetus)构建的粪便洞穴对O 2浓度和群落结构以及氨氧化细菌(AOB)和亚硝酸盐氧化细菌(NOB)丰度的影响。基于分子的方法和微电极。在水族馆开发的实验系统中进行的微电极测量显示,直接有证据表明O2会通过洞穴向下沉积到350 mm的沉积物深度。 16S rRNA基因克隆分析表明,沉积物表面和洞穴壁中的βproteobacterialAOB群落主要由亚硝基梭菌(Nitrosomonas sp。)主导。菌株Nm143样序列,以及沉积物表面和洞穴壁的类似Nitrospira的NOB克隆文库中的大多数克隆与Nitrospira滨海谱系有关。此外,我们通过实时定量PCR(Q-PCR)分析调查了粪便洞穴壁和大量沉积物中AOB和NOB的垂直分布。洞穴壁中的AOB和类硝基硝基NOB特异的16S rRNA基因拷贝数与沉积物表面相当。但是,在距地表50至55毫米深度处的洞穴壁中,这些数字高于在相同深度处的大量沉积物中的数字。微电极测量结果表明,洞穴壁上的NH4 + 消耗活动高于周围沉积物。这个结果与微观实验的结果一致,该实验表明NH4 + 和总无机氮的消耗率随着沉积物中不孕密度的增加而增加。这些结果清楚地表明,臭名昭著的洞穴刺激了O2进入沉积物中的迁移,否则还原条件将占主导地位,从而导致高NH4 + 消耗能力的发展。因此,臭虫洞成为潮间带沉积物中NH4 + 消耗的重要场所。

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