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Perfect and Near-Perfect Adaptation in a Model of Bacterial Chemotaxis

机译:细菌趋化性模型中的完美和近乎完美的适应。

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摘要

The signaling apparatus mediating bacterial chemotaxis can adapt to a wide range of persistent external stimuli. In many cases, the bacterial activity returns to its prestimulus level exactly, and this perfect adaptability is robust against variations in various chemotaxis protein concentrations. We model the bacterial chemotaxis signaling pathway, from ligand binding to CheY phosphorylation. By solving the steady-state equations of the model analytically, we derive a full set of conditions for the system to achieve perfect adaptation. The conditions related to the phosphorylation part of the pathway are discovered for the first time, while other conditions are generalizations of the ones found in previous works. Sensitivity of the perfect adaptation is evaluated by perturbing these conditions. We find that, even in the absence of some of the perfect adaptation conditions, adaptation can be achieved with near-perfect precision as a result of the separation of scales in both chemotaxis protein concentrations and reaction rates, or specific properties of the receptor distribution in different methylation states. Since near-perfect adaptation can be found in much larger regions of the parameter space than that defined by the perfect adaptation conditions, their existence is essential to understand robustness in bacterial chemotaxis.
机译:介导细菌趋化性的信号传导装置可以适应广泛的持续性外部刺激。在许多情况下,细菌的活性正好恢复到其刺激水平,这种完美的适应性对各种趋化性蛋白质浓度的变化具有较强的抵抗力。我们建模细菌趋化信号转导通路,从配体结合到CheY磷酸化。通过解析求解模型的稳态方程,我们得出系统实现完美自适应的全套条件。首次发现了与该途径的磷酸化部分有关的条件,而其他条件则是对先前工作中发现的条件的概括。通过扰动这些条件来评估完美适应的灵敏度。我们发现,即使没有某些完美的适应条件,由于趋化蛋白浓度和反应速率的尺度分离或受体中特定的受体分布特性的分离,也可以以近乎完美的精度实现适应。不同的甲基化状态。由于可以在参数空间中比完美适应条件所定义的区域大得多的区域找到近乎完美的适应性,因此它们的存在对于理解细菌趋化性的鲁棒性至关重要。

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