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Consensus embedding: theory algorithms and application to segmentation and classification of biomedical data

机译:共识嵌入:理论算法及其在生物医学数据分割和分类中的应用

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摘要

BackgroundDimensionality reduction (DR) enables the construction of a lower dimensional space (embedding) from a higher dimensional feature space while preserving object-class discriminability. However several popular DR approaches suffer from sensitivity to choice of parameters and/or presence of noise in the data. In this paper, we present a novel DR technique known as consensus embedding that aims to overcome these problems by generating and combining multiple low-dimensional embeddings, hence exploiting the variance among them in a manner similar to ensemble classifier schemes such as Bagging. We demonstrate theoretical properties of consensus embedding which show that it will result in a single stable embedding solution that preserves information more accurately as compared to any individual embedding (generated via DR schemes such as Principal Component Analysis, Graph Embedding, or Locally Linear Embedding). Intelligent sub-sampling (via mean-shift) and code parallelization are utilized to provide for an efficient implementation of the scheme.
机译:BackgroundDimensionality降低(DR)可以从较高维的特征空间构造较低维的空间(嵌入),同时保留对象类的可区分性。然而,几种流行的DR方法遭受对参数选择的敏感性和/或数据中噪声的存在。在本文中,我们提出了一种称为共识嵌入的新颖DR技术,旨在通过生成和组合多个低维嵌入来克服这些问题,从而以类似于整体分类器方案(例如Bagging)的方式利用它们之间的差异。我们证明了共识嵌入的理论特性,表明与单个嵌入(通过DR方案(例如主成分分析,图嵌入或局部线性嵌入)生成的)相比,它将产生一个稳定的嵌入解决方案,该解决方案可以更准确地保留信息。智能子采样(通过均值漂移)和代码并行化可用于有效实施该方案。

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