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Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences

机译:量化和减少虚假比对用于分析超短古DNA序列

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摘要

BackgroundThe study of ancient DNA is hampered by degradation, resulting in short DNA fragments. Advances in laboratory methods have made it possible to retrieve short DNA fragments, thereby improving access to DNA preserved in highly degraded, ancient material. However, such material contains large amounts of microbial contamination in addition to DNA fragments from the ancient organism. The resulting mixture of sequences constitutes a challenge for computational analysis, since microbial sequences are hard to distinguish from the ancient sequences of interest, especially when they are short.
机译:背景古代DNA的研究受到降解的阻碍,导致DNA片段短。实验室方法的进步使人们有可能回收短的DNA片段,从而改善了对高度降解的古老材料中保存的DNA的获取。但是,这种材料除了来自古代生物的DNA片段外,还含有大量微生物污染。最终的序列混合构成了计算分析的挑战,因为微生物序列很难与感兴趣的古老序列区分开,特别是当它们短时。

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