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De novo assembly and transcriptome dataset of liver testis and head kidney from red drum (Sciaenops ocellatus)

机译:从头开始从红色鼓(Sciaenops ocellatus)肝脏睾丸和头肾脏的组装和转录组数据集

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摘要

Red drum (Sciaenops ocellatus) is an estuarine Sciaenid with high commercial value and recreational demand. During the past 50 years, overfishing has caused declines in the population that resulted in the development of red drum commercial and stock enhancement aquaculture fisheries. Despite the potential high economic value in both wild and aquaculture commercial fisheries the availability of transcriptomic data for red drum in public databases is limited. The data here represents the transcriptome profiles of three tissues: liver, testis and head kidney from red drum. The data was generated using Illumina high-throughput RNA sequencing, Trinity for de novo assembly and Blast2GO for annotation. Six individual libraries were pooled for sequencing of the transcriptome and the raw fastq reads have been deposited in the NCBI-SRA database (accession number ).
机译:红鼓(Sciaenops ocellatus)是具有较高商业价值和娱乐需求的河口Sciaenid。在过去的50年中,过度捕捞导致人口减少,导致了红鼓商业和种群增加型水产养殖业的发展。尽管在野生和水产养殖商业渔业中都有潜在的高经济价值,但公共数据库中红鼓的转录组数据的可用性是有限的。此处的数据代表三个组织的转录组图谱:肝,睾丸和来自红鼓的肾脏。数据是使用Illumina高通量RNA测序,Trinity用于从头组装和Blast2GO用于注释生成的。汇集了六个单独的文库,用于转录组测序,原始的fastq读数已存储在NCBI-SRA数据库中(登录号)。

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