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From the Cover: Preordering of water is not needed for ice recognition by hyperactive antifreeze proteins

机译:从封面开始:不需要过多的防冻蛋白就能对冰进行识别

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摘要

Antifreeze proteins (AFPs) inhibit ice growth in organisms living in cold environments. Hyperactive insect AFPs are particularly effective, binding ice through “anchored clathrate” motifs. It has been hypothesized that the binding of hyperactive AFPs to ice is facilitated by preordering of water at the ice-binding site (IBS) of the protein in solution. The antifreeze protein TmAFP displays the best matching of its binding site to ice, making it the optimal candidate to develop ice-like order in solution. Here we use multiresolution simulations to unravel the mechanism by which TmAFP recognizes and binds ice. We find that water at the IBS of the antifreeze protein in solution does not acquire ice-like or anchored clathrate-like order. Ice recognition occurs by slow diffusion of the protein to achieve the proper orientation with respect to the ice surface, followed by fast collective organization of the hydration water at the IBS to form an anchored clathrate motif that latches the protein to the ice surface. The simulations suggest that anchored clathrate order could develop on the large ice-binding surfaces of aggregates of ice-nucleating proteins (INP). We compute the infrared and Raman spectra of water in the anchored clathrate motif. The signatures of the OH stretch of water in the anchored clathrate motif can be distinguished from those of bulk liquid in the Raman spectra, but not in the infrared spectra. We thus suggest that Raman spectroscopy may be used to probe the anchored clathrate order at the ice-binding surface of INP aggregates.
机译:抗冻蛋白(AFP)抑制生活在寒冷环境中的生物中的冰块生长。活跃的昆虫AFP特别有效,可通过“锚定笼形”图案结合冰。据推测,通过在溶液中蛋白质的冰结合位点(IBS)处预先订购水,可以促进高活性AFP与冰的结合。抗冻蛋白TmAFP显示其结合位点与冰的最佳匹配,使其成为在溶液中形成冰样顺序的最佳候选者。在这里,我们使用多分辨率模拟来揭示TmAFP识别并结合冰的机制。我们发现,溶液中抗冻蛋白的IBS处的水不会获得冰状或锚定的笼形物状顺序。冰的识别是通过蛋白质的缓慢扩散来实现的,从而相对于冰面实现正确的定向,然后在IBS处快速补充水的作用,形成锚定的笼形基序,从而将蛋白质锁定在冰面上。模拟表明,锚定包合物的顺序可能在冰核蛋白(INP)聚集体的大冰结合表面上形成。我们计算了固定的笼形图案中水的红外光谱和拉曼光谱。锚定的笼形图案中的OH片段水的特征可以与拉曼光谱中的本体液体特征区别开来,而在红外光谱中则不能。因此,我们建议拉曼光谱法可用于探测INP聚集体冰结合表面的锚定包合物顺序。

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