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A Rapid and Inexpensive PCR Test for Mastitis Diagnosis Based on NGS Data

机译:一种基于 NGS 数据的用于乳腺炎诊断的快速且廉价的 PCR 检测

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摘要

Mastitis is a common mammary gland disease of dairy cattle caused by a wide range of organisms including bacteria, fungi and algae. Mastitis contributes to economic losses of dairy farms due to reduced yield and poor quality of milk. Since the correct identification of pathogens responsible for the development of mastitis is crucial to the success of treatment, it is necessary to develop a quick and accurate test to distinguish the main pathogens causing this disease. In this paper, we describe the development of a test based on the multiplex polymerase chain reaction (PCR) method allowing for the identification of Streptococcus agalactiae, Streptococcus dysgalactiae, Streptococcus uberis and Staphylococcus aureus. When creating our test, we relied on the results from new generation sequencing (NGS) for accurate determination of species affiliation. The multiplex PCR test was verified on 100 strains including veterinary samples, ATCC and Polish Collection of Microorganisms (PCM) reference strains. The obtained results indicate that this test is accurate and displays high specificity. It may serve as a valuable molecular tool for the detection of major mastitis pathogens.
机译:乳腺炎是奶牛常见的乳腺疾病,由多种生物体引起,包括细菌、真菌和藻类。由于牛奶产量降低和质量差,乳腺炎会导致奶牛场的经济损失。由于正确识别导致乳腺炎发展的病原体对于治疗成功至关重要,因此有必要开发一种快速准确的测试来区分导致这种疾病的主要病原体。在本文中,我们描述了一种基于多重聚合酶链反应 (PCR) 方法的测试的开发,该方法可以识别无乳链球菌、乳异常链球菌、乌贝链球菌和金黄色葡萄球菌。在创建检测时,我们依靠新一代测序 (NGS) 的结果来准确确定物种归属。多重 PCR 检测在 100 种菌株上进行了验证,包括兽医样品、ATCC 和波兰微生物保藏中心 (PCM) 参考菌株。获得的结果表明,该测试是准确的,并且显示出高特异性。它可能作为检测主要乳腺炎病原体的有价值的分子工具。

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