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Complete Numerical Solution of the Diffusion Equation of Random Genetic Drift

机译:随机遗传漂移扩散方程的完整数值解

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摘要

A numerical method is presented to solve the diffusion equation for the random genetic drift that occurs at a single unlinked locus with two alleles. The method was designed to conserve probability, and the resulting numerical solution represents a probability distribution whose total probability is unity. We describe solutions of the diffusion equation whose total probability is unity as complete. Thus the numerical method introduced in this work produces complete solutions, and such solutions have the property that whenever fixation and loss can occur, they are automatically included within the solution. This feature demonstrates that the diffusion approximation can describe not only internal allele frequencies, but also the boundary frequencies zero and one. The numerical approach presented here constitutes a single inclusive framework from which to perform calculations for random genetic drift. It has a straightforward implementation, allowing it to be applied to a wide variety of problems, including those with time-dependent parameters, such as changing population sizes. As tests and illustrations of the numerical method, it is used to determine: (i) the probability density and time-dependent probability of fixation for a neutral locus in a population of constant size; (ii) the probability of fixation in the presence of selection; and (iii) the probability of fixation in the presence of selection and demographic change, the latter in the form of a changing population size.
机译:提出了一种数值方法来求解随机遗传漂移的扩散方程,该随机遗传漂移发生在具有两个等位基因的单个未链接基因座上。该方法旨在节省概率,并且所得的数值解表示总概率为1的概率分布。我们描述了总概率为1的扩散方程的解。因此,这项工作中引入的数值方法产生了完整的解决方案,并且这种解决方案具有以下特性:只要发生固定和丢失,它们就会自动包含在解决方案中。该特征表明,扩散近似不仅可以描述内部等位基因频率,而且可以描述边界频率零和一。这里介绍的数值方法构成一个单一的包含框架,从该框架可以执行随机遗传漂移的计算。它具有简单易用的实现方式,可将其应用于各种各样的问题,包括具有随时间变化的参数的问题,例如人口数量的变化。作为数值方法的检验和说明,它可用于确定:(i)固定大小种群中中性位点固定的概率密度和时间相关的概率; (ii)在有选择的情况下注视的可能性; (iii)在选择和人口变化的情况下注视的概率,后者以人口规模变化的形式出现。

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