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Whole genome sequence and genome annotation of Colletotrichum acutatum causal agent of anthracnose in pepper plants in South Korea

机译:韩国辣椒炭疽病的病原体炭疽菌的全基因组序列和基因组注释

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摘要

Colletotrichum acutatum is a destructive fungal pathogen which causes anthracnose in a wide range of crops. Here we report the whole genome sequence and annotation of C. acutatum strain KC05, isolated from an infected pepper in Kangwon, South Korea. Genomic DNA from the KC05 strain was used for the whole genome sequencing using a PacBio sequencer and the MiSeq system. The KC05 genome was determined to be 52,190,760 bp in size with a G + C content of 51.73% in 27 scaffolds and to contain 13,559 genes with an average length of 1516 bp. Gene prediction and annotation were performed by incorporating RNA-Seq data. The genome sequence of the KC05 was deposited at DDBJ/ENA/GenBank under the accession number .
机译:炭疽菌是一种破坏性真菌病原体,可在多种作物中引起炭疽病。在这里,我们报道了从韩国江原市的一个受感染的辣椒中分离出的番茄通心草菌株KC05的完整基因组序列和注释。使用PacBio测序仪和MiSeq系统,将来自KC05菌株的基因组DNA用于整个基因组测序。确定的KC05基因组大小为52190760 bp,在27个支架中G + C含量为51.73%,包含13559个基因,平均长度为1516 bp。通过整合RNA-Seq数据进行基因预测和注释。 KC05的基因组序列保藏在DDBJ / ENA / GenBank,登录号为。

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