Expression crystallization and preliminary X-ray crystallographic analysis of peptide deformylase from Xanthomonas oryzae pv. oryzae

摘要

Peptide deformylase (PDF) catalyzes the removal of the N-formyl group from the N-terminus of newly synthesized polypeptides; this process is crucial for cell survival. As it is an antibacterial drug target against Xanthomonas oryzae pv. oryzae (Xoo), PDF from Xoo was cloned, expressed, purified and crystallized. Native PDF crystals diffracted to 2.7 Å resolution and belonged to the hexagonal space group P6122, with unit-cell parameters a = b = 59.0, c = 266.3 Å. One monomer is present in the asymmetric unit, with a corresponding crystal volume per protein weight of 3.50 ų Da⁻¹ and a solvent content of 64.9%.