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QuantumMechanical Calculation of Noncovalent Interactions:A Large-Scale Evaluation of PMx DFT and SAPT Approaches

机译:量子非共价相互作用的机械计算:PMxDFT和SAPT方法的大规模评估

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摘要

Quantum mechanical (QM) calculations of noncovalent interactions are uniquely useful as tools to test and improve molecular mechanics force fields and to model the forces involved in biomolecular binding and folding. Because the more computationally tractable QM methods necessarily include approximations, which risk degrading accuracy, it is essential to evaluate such methods by comparison with high-level reference calculations. Here, we use the extensive Benchmark Energy and Geometry Database (BEGDB) of CCSD(T)/CBS reference results to evaluate the accuracy and speed of widely used QM methods for over 1200 chemically varied gas-phase dimers. In particular, we study the semiempirical PM6 and PM7 methods; density functional theory (DFT) approaches B3LYP, B97-D, M062X, and ωB97X-D; and symmetry-adapted perturbation theory (SAPT) approach. For the PM6 and DFT methods, we also examine the effects of post hoc corrections for hydrogen bonding (PM6-DH+, PM6-DH2), halogen atoms (PM6-DH2X), and dispersion (DFT-D3 with zero and Becke–Johnson damping). Several orders of theSAPT expansion are also compared, ranging from SAPT0 up to SAPT2+3,where computationally feasible. We find that all DFT methods withdispersion corrections, as well as SAPT at orders above SAPT2, consistentlyprovide dimer interaction energies within 1.0 kcal/mol RMSE acrossall systems. We also show that a linear scaling of the perturbativeenergy terms provided by the fast SAPT0 method yields similar highaccuracy, at particularly low computational cost. The energies ofall the dimer systems from the various QM approaches are includedin the Supporting Information, as are the full SAPT2+(3) energy decompositionfor a subset of over 1000 systems. The latter can be used to guidethe parametrization of molecular mechanics force fields on a term-by-termbasis.
机译:非共价相互作用的量子力学(QM)计算作为测试和改善分子力学力场以及对生物分子结合和折叠所涉及的力进行建模的工具非常有用。由于在计算上更易于处理的QM方法必须包含近似值,因此可能会降低准确性,因此必须通过与高级参考计算进行比较来评估此类方法。在这里,我们使用CCSD(T)/ CBS参考结果的广泛基准能和几何数据库(BEGDB)来评估针对1200多种化学变化的气相二聚体广泛使用的QM方法的准确性和速度。特别是,我们研究了PM6和PM7的半经验方法。密度泛函理论(DFT)接近B3LYP,B97-D,M062X和ωB97X-D;和对称自适应扰动理论(SAPT)方法。对于PM6和DFT方法,我们还检查了事后校正对氢键(PM6-DH +,PM6-DH2),卤素原子(PM6-DH2X)和色散(DFT-D3零阻尼和Becke-Johnson阻尼)的影响。 )。几个订单还比较了SAPT扩展,范围从SAPT0到SAPT2 + 3,在计算上可行的地方。我们发现所有DFT方法都具有色散校正以及SAPT在SAPT2以上的订单提供在1.0 kcal / mol RMSE之内的二聚体相互作用能所有系统。我们还证明了扰动的线性定标快速SAPT0方法提供的能量项产生相似的高精度高,计算成本低。的能量包括来自各种QM方法的所有二聚体系统在支持信息中,以及完整的SAPT2 +(3)能量分解适用于1000多个系统的子集。后者可以用来指导逐项地对分子力学力场进行参数化基础。

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