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Functional analysis of cell cycle genes by genome-wide expression data and meta-analysis of RNAi screens.

机译:通过全基因组表达数据和RNAi筛查的荟萃分析对细胞周期基因进行功能分析。

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摘要

Successful traversal of the cell division cycle is paramount for maintaining a cell's genomic integrity and fitness. To ensure the faithful replication and segregation of the genome, cellular components, and cytoplasm, eukaryotes have evolved a complex cell cycle, with layers of regulation and built-in checkpoints. Disruption of any of these processes can be catastrophic for the cell or organism, often resulting in deleterious mutations or cell death. As deletion/improper activation of key regulatory proteins has been shown to be involved in tumorigenesis, a full understanding of the cell cycle machinery is of vital importance.;The work presented here seeks to investigate the cell cycle using three different methods. First, I used existing cell cycle data to further investigate the function of the gene FAM64A, which I hypothesized would play a role in maintaining or establishing the mitotic spindle. Fam64A was identified as showing peak mRNA expression in G2/M phase in genome-wide expression data; I further showed that the protein was also cell cycle-regulated, and was degraded by the proteasome at the end of mitosis. I report that the knockdown of Fam64A by siRNA results in monopolar spindles. Functionally, Fam64A interacts with members of the Chromosomal Passenger Complex (CPC) and other key mitotic regulators in vivo.;I also sought to identify the full complement of cell cycle-regulated genes in an untransformed cell line, Immortalized Mammary Epithelial Cells (IMECs). While there exist studies identifying cell cycle-regulated genes, often these are performed in tumor-derived cell lines, and here I report that the genes identified as cell cycle-regulated in IMECs are quite divergent from those reported in HeLa cells, suggesting that genes required for cell cycle progression may vary between cells of different lineages and transformation status.;Finally, I performed a meta-analysis of existing large-scale and genome-wide screens for genes required for cell cycle progression. I found that the overlap between four published screens was very small, with only Polo-like kinase 1 being identified as having a cell cycle phenotype in all four screens. This underscores the need for more of such screens using a variety of cell lines and techniques. With the collation of many similar screens, I may achieve a much more complete understanding of the many proteins required for cell cycle progression, and with that, perhaps future targets for cancer therapies.
机译:成功穿越细胞分裂周期对于维持细胞的基因组完整性和适应性至关重要。为了确保基因组,细胞成分和细胞质的忠实复制和分离,真核生物进化出了一个复杂的细胞周期,具有调控层和内置检查点。这些过程中的任何一个中断都会对细胞或生物造成灾难性的后果,通常会导致有害的突变或细胞死亡。由于已证明关键调节蛋白的缺失/激活不正确与肿瘤发生有关,因此全面了解细胞周期机制至关重要。;本文提出的工作旨在使用三种不同方法研究细胞周期。首先,我使用现有的细胞周期数据进一步研究了FAM64A基因的功能,我认为该基因将在维持或建立有丝分裂纺锤体中发挥作用。在全基因组表达数据中,Fam64A被鉴定为在G2 / M期显示峰值mRNA表达;我进一步证明了该蛋白也受到细胞周期的调节,并在有丝分裂结束时被蛋白酶体降解。我报告说,siRNA抑制Fam64A会导致单极纺锤体。在功能上,Fam64A在体内与染色体乘客复合体(CPC)的成员和其他主要的有丝分裂调节剂相互作用。我还试图在未转化的细胞系永生化的乳腺上皮细胞(IMEC)中鉴定细胞周期调控基因的完整互补物。 。尽管已有研究确定细胞周期调控的基因,但这些基因通常在肿瘤衍生的细胞系中进行,在这里我报道说,在IMEC中鉴定为细胞周期调控的基因与HeLa细胞中报道的基因有很大差异,这表明该基因细胞周期进程所需的基因可能因不同谱系和转化状态的细胞而异。最后,我对现有的大规模和全基因组筛选进行了荟萃分析,以筛选出细胞周期进程所需的基因。我发现四个已发布的屏幕之间的重叠非常小,在所有四个屏幕中只有Polo样激酶1被确定具有细胞周期表型。这强调了使用多种细胞系和技术对更多此类屏幕的需求。通过许多类似屏幕的比较,我可以对细胞周期进程所需的许多蛋白质有更全面的了解,并由此获得也许是癌症治疗的未来目标。

著录项

  • 作者

    George, Lacy K.;

  • 作者单位

    Dartmouth College.;

  • 授予单位 Dartmouth College.;
  • 学科 Biology Genetics.;Biology Cell.
  • 学位 Ph.D.
  • 年度 2010
  • 页码 169 p.
  • 总页数 169
  • 原文格式 PDF
  • 正文语种 eng
  • 中图分类
  • 关键词

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