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Classify cellular phenotype in high-throughput fluorescence microcopy images for RNAi genome-wide screening

机译:在高通量荧光微拷贝图像中对RNAi基因组宽筛选进行分类

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As we know, the genes could cause the cell phenotypes changed dramatically. Currently, biologists attempt to perform the genome-wide RNAi screening to identify various image phenotypes. It is a challenging task to recognize the phenotypes automatically because of the noisy background and low contrast of fluorescence images. In this work, we applied two cellular segmentation techniques, deformable model and Cellprofiler software, for the preprocess of cellular segmentation. Then five kinds of features including wavelet feature, moments feature, haralick co-occurrence feature, region property feature, and problem-specific shape descriptor are extracted from the cellular patches. The Genetic Algorithm (GA) is applied to select a subset of the most discriminate features to remove the irrelevance and redundancy. We use Linear Discriminant Analysis (LDA) as the tool for training the statistical classification model. Experimental results show the proposed approach works well in RNAi screening.
机译:众所周知,基因可能导致细胞表型急剧发生变化。目前,生物学家试图进行基因组RNAi筛查以识别各种图像表型。由于嘈杂的背景和荧光图像的低对比度,自动识别表型是一个具有挑战性的任务。在这项工作中,我们应用了两个蜂窝分割技术,可变形模型和CellProfiler软件,用于蜂窝分割的预处理。然后,从蜂窝贴片中提取五种功能,包括小波功能,矩特征,haralick共发生功能,区域属性特征和问题特定形状描述符。遗传算法(GA)应用于选择最辨别的特征的子集,以消除无关紧要和冗余。我们使用线性判别分析(LDA)作为培训统计分类模型的工具。实验结果表明,在RNAi筛查中,拟议的方法很好。

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